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Mutant Information

Mutant Name	FN-159 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-159 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1789544 T-C Hetero INTERGENIC
SBS Chr1 9676465 G-A Hetero UTR_3_PRIME
SBS Chr1 12698352 C-G Hetero INTRON
SBS Chr1 14064080 G-A Hetero INTERGENIC
SBS Chr1 21242259 A-G Hetero INTERGENIC
SBS Chr1 32132733 T-A Hetero INTERGENIC
SBS Chr2 17250604 G-T Homo INTERGENIC
SBS Chr3 21215495 T-C Hetero INTERGENIC
SBS Chr3 24226392 A-T Hetero INTERGENIC
SBS Chr3 35164541 G-A Homo INTERGENIC
SBS Chr3 35164543 T-A Homo INTERGENIC
SBS Chr4 13075767 A-T Hetero INTERGENIC
SBS Chr4 19064232 T-C Hetero INTERGENIC
SBS Chr4 24592708 G-A Homo INTERGENIC
SBS Chr4 26520587 C-T Hetero INTERGENIC
SBS Chr5 4365993 G-C Hetero INTERGENIC
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr5 19158325 C-T Hetero INTERGENIC
SBS Chr6 11071040 G-A Hetero INTERGENIC
SBS Chr6 30234219 G-A Homo INTERGENIC
SBS Chr7 2449133 T-G Hetero INTERGENIC
SBS Chr7 7178336 A-T Hetero INTERGENIC
SBS Chr7 16870411 C-T Homo INTERGENIC
SBS Chr8 5310203 G-T Hetero INTERGENIC
SBS Chr8 6636175 G-T Homo INTERGENIC
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 18212230 G-A Homo INTERGENIC
SBS Chr8 21999821 C-T Homo NON_SYNONYMOUS_CODING OsKitaake08g166900
SBS Chr11 3122888 C-T Hetero INTERGENIC
SBS Chr11 10118065 C-T Hetero INTRON
SBS Chr11 12595803 C-A Hetero INTERGENIC
SBS Chr11 12818411 G-A Hetero INTERGENIC
SBS Chr11 13083350 C-G Hetero INTERGENIC
SBS Chr11 14074361 C-T Hetero INTERGENIC
SBS Chr12 22448328 C-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 89043 89396 353
Deletion Chr10 1423020 1423145 125
Deletion Chr4 2700001 2794000 93999
Deletion Chr4 2797001 2822000 24999
Deletion Chr4 2826001 2916000 89999
Deletion Chr6 4175677 4175678 1
Deletion Chr4 4573600 4573603 3
Deletion Chr8 5255130 5255132 2
Deletion Chr7 5388129 5388407 278 OsKitaake07g065500
Deletion Chr4 6323198 6323201 3
Deletion Chr5 12965974 12965976 2 OsKitaake05g100400
Deletion Chr10 17160971 17160972 1
Deletion Chr5 23268781 23268783 2
Deletion Chr1 26000645 26000647 2 OsKitaake01g252800
Deletion Chr1 42062363 42062364 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr12 26668924 26668927 2
Insertion Chr4 2728023 2728026 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 408208 Chr3 7647311 OsKitaake03g106000
Translocation Chr5 408212 Chr3 7647978 OsKitaake03g106000
Translocation Chr3 10350145 Chr2 25661221 OsKitaake02g253700
Translocation Chr3 10350537 Chr2 25661227 OsKitaake02g253700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1789544	T-C	Hetero	INTERGENIC
SBS	Chr1	9676465	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	12698352	C-G	Hetero	INTRON
SBS	Chr1	14064080	G-A	Hetero	INTERGENIC
SBS	Chr1	21242259	A-G	Hetero	INTERGENIC
SBS	Chr1	32132733	T-A	Hetero	INTERGENIC
SBS	Chr2	17250604	G-T	Homo	INTERGENIC
SBS	Chr3	21215495	T-C	Hetero	INTERGENIC
SBS	Chr3	24226392	A-T	Hetero	INTERGENIC
SBS	Chr3	35164541	G-A	Homo	INTERGENIC
SBS	Chr3	35164543	T-A	Homo	INTERGENIC
SBS	Chr4	13075767	A-T	Hetero	INTERGENIC
SBS	Chr4	19064232	T-C	Hetero	INTERGENIC
SBS	Chr4	24592708	G-A	Homo	INTERGENIC
SBS	Chr4	26520587	C-T	Hetero	INTERGENIC
SBS	Chr5	4365993	G-C	Hetero	INTERGENIC
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr5	19158325	C-T	Hetero	INTERGENIC
SBS	Chr6	11071040	G-A	Hetero	INTERGENIC
SBS	Chr6	30234219	G-A	Homo	INTERGENIC
SBS	Chr7	2449133	T-G	Hetero	INTERGENIC
SBS	Chr7	7178336	A-T	Hetero	INTERGENIC
SBS	Chr7	16870411	C-T	Homo	INTERGENIC
SBS	Chr8	5310203	G-T	Hetero	INTERGENIC
SBS	Chr8	6636175	G-T	Homo	INTERGENIC
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	18212230	G-A	Homo	INTERGENIC
SBS	Chr8	21999821	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g166900
SBS	Chr11	3122888	C-T	Hetero	INTERGENIC
SBS	Chr11	10118065	C-T	Hetero	INTRON
SBS	Chr11	12595803	C-A	Hetero	INTERGENIC
SBS	Chr11	12818411	G-A	Hetero	INTERGENIC
SBS	Chr11	13083350	C-G	Hetero	INTERGENIC
SBS	Chr11	14074361	C-T	Hetero	INTERGENIC
SBS	Chr12	22448328	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	89043	89396	353
Deletion	Chr10	1423020	1423145	125
Deletion	Chr4	2700001	2794000	93999
Deletion	Chr4	2797001	2822000	24999
Deletion	Chr4	2826001	2916000	89999
Deletion	Chr6	4175677	4175678	1
Deletion	Chr4	4573600	4573603	3
Deletion	Chr8	5255130	5255132	2
Deletion	Chr7	5388129	5388407	278	OsKitaake07g065500
Deletion	Chr4	6323198	6323201	3
Deletion	Chr5	12965974	12965976	2	OsKitaake05g100400
Deletion	Chr10	17160971	17160972	1
Deletion	Chr5	23268781	23268783	2
Deletion	Chr1	26000645	26000647	2	OsKitaake01g252800
Deletion	Chr1	42062363	42062364	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	408208	Chr3	7647311	OsKitaake03g106000
Translocation	Chr5	408212	Chr3	7647978	OsKitaake03g106000
Translocation	Chr3	10350145	Chr2	25661221	OsKitaake02g253700
Translocation	Chr3	10350537	Chr2	25661227	OsKitaake02g253700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes