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Mutant Information

Mutant Name	FN-16 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-16 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8713876 A-G Homo INTERGENIC
SBS Chr2 2174115 G-A Hetero INTERGENIC
SBS Chr2 11036205 G-A Hetero INTERGENIC
SBS Chr3 19692748 T-C Homo INTERGENIC
SBS Chr3 27356022 C-T Hetero INTERGENIC
SBS Chr4 3452780 C-T Hetero INTERGENIC
SBS Chr4 27118268 A-T Homo NON_SYNONYMOUS_CODING OsKitaake04g197200
SBS Chr4 27380273 G-A Hetero INTERGENIC
SBS Chr4 29745002 G-A Hetero INTERGENIC
SBS Chr4 35604134 G-T Hetero INTERGENIC
SBS Chr5 3301937 C-A Hetero INTERGENIC
SBS Chr5 17652887 A-T Homo INTERGENIC
SBS Chr5 27359802 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g247800
SBS Chr6 3097969 T-A Homo INTERGENIC
SBS Chr6 6292351 C-T Homo INTERGENIC
SBS Chr7 4688634 G-C Hetero INTERGENIC
SBS Chr7 9366794 G-A Hetero INTERGENIC
SBS Chr7 11716892 T-C Hetero INTERGENIC
SBS Chr7 27486726 A-G Hetero INTERGENIC
SBS Chr8 10406345 A-C Homo INTERGENIC
SBS Chr9 9420636 C-T Homo SYNONYMOUS_CODING
SBS Chr9 13407278 C-A Hetero INTERGENIC
SBS Chr10 1888729 C-T Hetero INTERGENIC
SBS Chr11 4589083 G-A Hetero INTERGENIC
SBS Chr12 7330881 C-T Hetero INTERGENIC
SBS Chr12 20528026 T-C Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2501987 2501988 1
Deletion Chr8 6899110 6899114 4
Deletion Chr1 7728112 7728126 14
Deletion Chr9 10173001 10287000 113999 8
Deletion Chr1 12504896 12504903 7
Deletion Chr2 15204456 15204613 157
Deletion Chr6 18311762 18311769 7
Deletion Chr6 19031021 19031026 5
Deletion Chr5 22069502 22069503 1
Deletion Chr2 22567482 22567486 4
Deletion Chr7 25406982 25407303 321
Deletion Chr1 35407991 35408000 9
Deletion Chr1 44047842 44048106 264

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 23203682 23203684 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8713876	A-G	Homo	INTERGENIC
SBS	Chr2	2174115	G-A	Hetero	INTERGENIC
SBS	Chr2	11036205	G-A	Hetero	INTERGENIC
SBS	Chr3	19692748	T-C	Homo	INTERGENIC
SBS	Chr3	27356022	C-T	Hetero	INTERGENIC
SBS	Chr4	3452780	C-T	Hetero	INTERGENIC
SBS	Chr4	27118268	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g197200
SBS	Chr4	27380273	G-A	Hetero	INTERGENIC
SBS	Chr4	29745002	G-A	Hetero	INTERGENIC
SBS	Chr4	35604134	G-T	Hetero	INTERGENIC
SBS	Chr5	3301937	C-A	Hetero	INTERGENIC
SBS	Chr5	17652887	A-T	Homo	INTERGENIC
SBS	Chr5	27359802	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g247800
SBS	Chr6	3097969	T-A	Homo	INTERGENIC
SBS	Chr6	6292351	C-T	Homo	INTERGENIC
SBS	Chr7	4688634	G-C	Hetero	INTERGENIC
SBS	Chr7	9366794	G-A	Hetero	INTERGENIC
SBS	Chr7	11716892	T-C	Hetero	INTERGENIC
SBS	Chr7	27486726	A-G	Hetero	INTERGENIC
SBS	Chr8	10406345	A-C	Homo	INTERGENIC
SBS	Chr9	9420636	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr9	13407278	C-A	Hetero	INTERGENIC
SBS	Chr10	1888729	C-T	Hetero	INTERGENIC
SBS	Chr11	4589083	G-A	Hetero	INTERGENIC
SBS	Chr12	7330881	C-T	Hetero	INTERGENIC
SBS	Chr12	20528026	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2501987	2501988	1
Deletion	Chr8	6899110	6899114	4
Deletion	Chr1	7728112	7728126	14
Deletion	Chr9	10173001	10287000	113999	8
Deletion	Chr1	12504896	12504903	7
Deletion	Chr2	15204456	15204613	157
Deletion	Chr6	18311762	18311769	7
Deletion	Chr6	19031021	19031026	5
Deletion	Chr5	22069502	22069503	1
Deletion	Chr2	22567482	22567486	4
Deletion	Chr7	25406982	25407303	321
Deletion	Chr1	35407991	35408000	9
Deletion	Chr1	44047842	44048106	264

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes