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Mutant Information

Mutant Name	FN-160 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-160 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4220277 T-C Hetero INTRON
SBS Chr1 37865177 A-T Homo INTERGENIC
SBS Chr1 43588196 G-A Homo INTERGENIC
SBS Chr2 2248860 A-T Homo INTRON
SBS Chr2 7242275 A-G Homo INTERGENIC
SBS Chr2 24652347 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 2141098 G-C Hetero INTERGENIC
SBS Chr3 27455900 G-A Hetero INTERGENIC
SBS Chr4 1637124 G-T Hetero INTERGENIC
SBS Chr4 24801426 T-C Homo INTERGENIC
SBS Chr4 27134402 A-T Homo INTERGENIC
SBS Chr4 34774059 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g290600
SBS Chr5 6031712 T-G Homo INTERGENIC
SBS Chr5 11573395 A-G Hetero INTERGENIC
SBS Chr6 3710950 T-A Hetero INTERGENIC
SBS Chr7 20355411 G-C Homo NON_SYNONYMOUS_CODING OsKitaake07g167600
SBS Chr7 27957051 T-A Homo INTERGENIC
SBS Chr8 7440864 T-C Hetero INTERGENIC
SBS Chr8 20265223 A-T Hetero UTR_3_PRIME
SBS Chr9 12129025 C-T Homo INTERGENIC
SBS Chr9 18644438 A-C Hetero INTERGENIC
SBS Chr9 18901350 T-C Hetero UTR_3_PRIME
SBS Chr10 13101464 A-T Hetero INTERGENIC
SBS Chr10 16527681 T-A Homo INTERGENIC
SBS Chr11 744507 T-G Homo INTERGENIC
SBS Chr11 11747156 C-T Homo INTERGENIC
SBS Chr11 19891126 G-A Homo INTERGENIC
SBS Chr11 23461799 T-A Hetero INTRON
SBS Chr12 9477150 T-C Homo INTERGENIC
SBS Chr12 12836677 A-G Homo INTERGENIC
SBS Chr12 13382318 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr6 392430 392433 3
Deletion Chr11 691712 691723 11 OsKitaake11g008500
Deletion Chr1 2501146 2501194 48
Deletion Chr8 5072790 5073158 368
Deletion Chr9 5156940 5156948 8
Deletion Chr6 5594706 5594708 2
Deletion Chr11 5790681 5790682 1
Deletion Chr11 6167510 6167511 1
Deletion Chr12 9057067 9057069 2
Deletion Chr5 9226001 9292000 65999 4
Deletion Chr10 10611693 10611695 2
Deletion Chr6 11704166 11704167 1
Deletion Chr11 14685502 14685505 3
Deletion Chr2 16283309 16283311 2
Deletion Chr11 16429697 16429822 125
Deletion Chr6 16935001 17153000 217999 15
Deletion Chr1 17897109 17897110 1
Deletion Chr3 18897752 18897754 2 OsKitaake03g227200
Deletion Chr11 20676876 20676877 1
Deletion Chr1 21864001 22166000 301999 13
Deletion Chr10 22702706 22702709 3
Deletion Chr5 23741710 23741715 5
Deletion Chr11 26659983 26660376 393

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5964366 5964369 2
Insertion Chr7 21320178 21320180 1
Insertion Chr11 10133166 10133169 2
Insertion Chr7 12045873 12045875 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 15451643 15611190
Inversion Chr10 15451832 15611198

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 21849576 Chr6 28910902 OsKitaake06g266900
Translocation Chr8 21849736 Chr6 28911006 OsKitaake06g266900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4220277	T-C	Hetero	INTRON
SBS	Chr1	37865177	A-T	Homo	INTERGENIC
SBS	Chr1	43588196	G-A	Homo	INTERGENIC
SBS	Chr2	2248860	A-T	Homo	INTRON
SBS	Chr2	7242275	A-G	Homo	INTERGENIC
SBS	Chr2	24652347	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	2141098	G-C	Hetero	INTERGENIC
SBS	Chr3	27455900	G-A	Hetero	INTERGENIC
SBS	Chr4	1637124	G-T	Hetero	INTERGENIC
SBS	Chr4	24801426	T-C	Homo	INTERGENIC
SBS	Chr4	27134402	A-T	Homo	INTERGENIC
SBS	Chr4	34774059	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g290600
SBS	Chr5	6031712	T-G	Homo	INTERGENIC
SBS	Chr5	11573395	A-G	Hetero	INTERGENIC
SBS	Chr6	3710950	T-A	Hetero	INTERGENIC
SBS	Chr7	20355411	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g167600
SBS	Chr7	27957051	T-A	Homo	INTERGENIC
SBS	Chr8	7440864	T-C	Hetero	INTERGENIC
SBS	Chr8	20265223	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	12129025	C-T	Homo	INTERGENIC
SBS	Chr9	18644438	A-C	Hetero	INTERGENIC
SBS	Chr9	18901350	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	13101464	A-T	Hetero	INTERGENIC
SBS	Chr10	16527681	T-A	Homo	INTERGENIC
SBS	Chr11	744507	T-G	Homo	INTERGENIC
SBS	Chr11	11747156	C-T	Homo	INTERGENIC
SBS	Chr11	19891126	G-A	Homo	INTERGENIC
SBS	Chr11	23461799	T-A	Hetero	INTRON
SBS	Chr12	9477150	T-C	Homo	INTERGENIC
SBS	Chr12	12836677	A-G	Homo	INTERGENIC
SBS	Chr12	13382318	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr6	392430	392433	3
Deletion	Chr11	691712	691723	11	OsKitaake11g008500
Deletion	Chr1	2501146	2501194	48
Deletion	Chr8	5072790	5073158	368
Deletion	Chr9	5156940	5156948	8
Deletion	Chr6	5594706	5594708	2
Deletion	Chr11	5790681	5790682	1
Deletion	Chr11	6167510	6167511	1
Deletion	Chr12	9057067	9057069	2
Deletion	Chr5	9226001	9292000	65999	4
Deletion	Chr10	10611693	10611695	2
Deletion	Chr6	11704166	11704167	1
Deletion	Chr11	14685502	14685505	3
Deletion	Chr2	16283309	16283311	2
Deletion	Chr11	16429697	16429822	125
Deletion	Chr6	16935001	17153000	217999	15
Deletion	Chr1	17897109	17897110	1
Deletion	Chr3	18897752	18897754	2	OsKitaake03g227200
Deletion	Chr11	20676876	20676877	1
Deletion	Chr1	21864001	22166000	301999	13
Deletion	Chr10	22702706	22702709	3
Deletion	Chr5	23741710	23741715	5
Deletion	Chr11	26659983	26660376	393

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15451643	15611190
Inversion	Chr10	15451832	15611198

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes