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| Mutant Information |
|---|
| Mutant Name | FN-161 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-161 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2839529 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 11832364 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 13935254 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15192212 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g144500 |
| SBS | Chr1 | 26144776 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 31672356 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 32535770 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 43666896 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 14074193 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17886444 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 16120415 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18310182 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 33234160 | G-A | Homo | INTRON | |
| SBS | Chr4 | 25136999 | C-A | Homo | INTRON | |
| SBS | Chr4 | 32149994 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35980499 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24988870 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 275490 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29957466 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 727748 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1187420 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7090297 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16389013 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18627377 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 24385391 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 27831535 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2226088 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12733008 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12733009 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8499096 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 10892638 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 854080 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 7394021 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8258656 | G-C | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr12 | 11214353 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18308032 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23614267 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26836228 | G-A | Hetero | INTRON |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 90225 | 90930 | 705 | |
| Deletion | Chr5 | 1738296 | 1738305 | 9 | |
| Deletion | Chr6 | 2352790 | 2352796 | 6 | |
| Deletion | Chr10 | 3084119 | 3084413 | 294 | |
| Deletion | Chr10 | 3868573 | 3868574 | 1 | |
| Deletion | Chr9 | 4014642 | 4014767 | 125 | |
| Deletion | Chr7 | 5229535 | 5229539 | 4 | |
| Deletion | Chr8 | 5432526 | 5432528 | 2 | |
| Deletion | Chr1 | 6162035 | 6162036 | 1 | OsKitaake01g078600 |
| Deletion | Chr1 | 8663771 | 8663772 | 1 | |
| Deletion | Chr10 | 8675673 | 8675840 | 167 | |
| Deletion | Chr3 | 10584002 | 10584004 | 2 | |
| Deletion | Chr10 | 11001001 | 11161000 | 159999 | 4 |
| Deletion | Chr10 | 14331206 | 14331208 | 2 | |
| Deletion | Chr2 | 15796079 | 15796080 | 1 | |
| Deletion | Chr5 | 18068325 | 18068326 | 1 | |
| Deletion | Chr6 | 22138068 | 22138085 | 17 | |
| Deletion | Chr12 | 25213250 | 25213252 | 2 | OsKitaake12g205200 |
| Deletion | Chr8 | 28473846 | 28473870 | 24 | |
| Deletion | Chr3 | 33018774 | 33018778 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 14330127 | 14330130 | 2 | |
| Insertion | Chr7 | 24308583 | 24308587 | 3 | |
| Insertion | Chr1 | 38196203 | 38196210 | 6 | OsKitaake01g407400  |