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Mutant Information

Mutant Name	FN-162 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-162 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22525040 G-A Hetero INTERGENIC
SBS Chr2 22414309 A-C Hetero INTERGENIC
SBS Chr3 6098360 A-G Hetero INTRON
SBS Chr3 6679633 G-A Homo INTERGENIC
SBS Chr3 16362967 A-T Hetero INTERGENIC
SBS Chr3 25065704 C-T Homo INTERGENIC
SBS Chr3 26035585 T-G Hetero INTRON
SBS Chr3 29217811 A-T Homo INTRON
SBS Chr4 7559966 C-G Hetero INTERGENIC
SBS Chr4 21217247 C-T Hetero INTERGENIC
SBS Chr4 25902577 G-A Hetero INTERGENIC
SBS Chr4 29494711 A-C Homo NON_SYNONYMOUS_CODING OsKitaake04g226000
SBS Chr4 29494712 C-A Homo NON_SYNONYMOUS_CODING OsKitaake04g226000
SBS Chr4 36191918 G-A Homo INTERGENIC
SBS Chr5 15906444 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g122100
SBS Chr6 2130348 C-T Hetero UTR_5_PRIME
SBS Chr7 9874083 G-A Hetero INTERGENIC
SBS Chr7 12178098 C-T Hetero INTERGENIC
SBS Chr7 13886517 G-C Hetero INTERGENIC
SBS Chr7 16459268 C-A Hetero INTERGENIC
SBS Chr8 1198831 A-G Hetero INTERGENIC
SBS Chr9 714300 C-T Hetero INTERGENIC
SBS Chr9 1274539 C-G Hetero INTERGENIC
SBS Chr9 15206184 T-A Hetero INTERGENIC
SBS Chr10 5523909 T-A Hetero INTRON
SBS Chr10 6203852 C-T Hetero INTERGENIC
SBS Chr11 16479917 G-A Hetero INTERGENIC
SBS Chr11 16712912 T-A Hetero INTERGENIC
SBS Chr11 17011274 A-G Hetero INTERGENIC
SBS Chr12 3143667 A-C Hetero INTERGENIC
SBS Chr12 6938321 G-A Homo INTERGENIC
SBS Chr12 10737526 G-A Hetero INTERGENIC
SBS Chr12 14361484 T-A Homo INTERGENIC
SBS Chr12 16741803 T-A Hetero INTERGENIC
SBS Chr12 16741804 G-T Hetero INTERGENIC
SBS Chr12 17681780 G-C Hetero INTERGENIC
SBS Chr12 19346937 G-A Hetero INTERGENIC
SBS Chr12 21255227 A-G Hetero INTERGENIC
SBS Chr12 23447284 T-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 416465 416466 1 OsKitaake03g006400
Deletion Chr10 911861 911863 2
Deletion Chr3 2250001 2451000 200999 19
Deletion Chr12 3923880 3924006 126
Deletion Chr8 4536471 4536473 2
Deletion Chr5 4762409 4762418 9
Deletion Chr12 5837981 5837983 2
Deletion Chr5 6846099 6846102 3
Deletion Chr7 8165312 8165403 91 OsKitaake07g089300
Deletion Chr11 8890001 9247000 356999 17
Deletion Chr8 9047542 9047553 11
Deletion Chr8 9048662 9048664 2
Deletion Chr5 12380137 12380144 7
Deletion Chr5 12424107 12424108 1
Deletion Chr7 12991964 12992031 67
Deletion Chr2 15996897 15997181 284
Deletion Chr4 17767337 17767450 113
Deletion Chr3 18909296 18909298 2
Deletion Chr9 19343440 19343445 5
Deletion Chr2 19462204 19462314 110
Deletion Chr2 21617571 21617786 215
Deletion Chr4 28332932 28332938 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 12342908 12342912 3
Insertion Chr7 28157969 28157971 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2070866 2250145 OsKitaake03g032500
Inversion Chr5 17401865 17635181

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 11282856 Chr1 23106647
Translocation Chr10 11282857 Chr1 23106906

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22525040	G-A	Hetero	INTERGENIC
SBS	Chr2	22414309	A-C	Hetero	INTERGENIC
SBS	Chr3	6098360	A-G	Hetero	INTRON
SBS	Chr3	6679633	G-A	Homo	INTERGENIC
SBS	Chr3	16362967	A-T	Hetero	INTERGENIC
SBS	Chr3	25065704	C-T	Homo	INTERGENIC
SBS	Chr3	26035585	T-G	Hetero	INTRON
SBS	Chr3	29217811	A-T	Homo	INTRON
SBS	Chr4	7559966	C-G	Hetero	INTERGENIC
SBS	Chr4	21217247	C-T	Hetero	INTERGENIC
SBS	Chr4	25902577	G-A	Hetero	INTERGENIC
SBS	Chr4	29494711	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g226000
SBS	Chr4	29494712	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g226000
SBS	Chr4	36191918	G-A	Homo	INTERGENIC
SBS	Chr5	15906444	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g122100
SBS	Chr6	2130348	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	9874083	G-A	Hetero	INTERGENIC
SBS	Chr7	12178098	C-T	Hetero	INTERGENIC
SBS	Chr7	13886517	G-C	Hetero	INTERGENIC
SBS	Chr7	16459268	C-A	Hetero	INTERGENIC
SBS	Chr8	1198831	A-G	Hetero	INTERGENIC
SBS	Chr9	714300	C-T	Hetero	INTERGENIC
SBS	Chr9	1274539	C-G	Hetero	INTERGENIC
SBS	Chr9	15206184	T-A	Hetero	INTERGENIC
SBS	Chr10	5523909	T-A	Hetero	INTRON
SBS	Chr10	6203852	C-T	Hetero	INTERGENIC
SBS	Chr11	16479917	G-A	Hetero	INTERGENIC
SBS	Chr11	16712912	T-A	Hetero	INTERGENIC
SBS	Chr11	17011274	A-G	Hetero	INTERGENIC
SBS	Chr12	3143667	A-C	Hetero	INTERGENIC
SBS	Chr12	6938321	G-A	Homo	INTERGENIC
SBS	Chr12	10737526	G-A	Hetero	INTERGENIC
SBS	Chr12	14361484	T-A	Homo	INTERGENIC
SBS	Chr12	16741803	T-A	Hetero	INTERGENIC
SBS	Chr12	16741804	G-T	Hetero	INTERGENIC
SBS	Chr12	17681780	G-C	Hetero	INTERGENIC
SBS	Chr12	19346937	G-A	Hetero	INTERGENIC
SBS	Chr12	21255227	A-G	Hetero	INTERGENIC
SBS	Chr12	23447284	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	416465	416466	1	OsKitaake03g006400
Deletion	Chr10	911861	911863	2
Deletion	Chr3	2250001	2451000	200999	19
Deletion	Chr12	3923880	3924006	126
Deletion	Chr8	4536471	4536473	2
Deletion	Chr5	4762409	4762418	9
Deletion	Chr12	5837981	5837983	2
Deletion	Chr5	6846099	6846102	3
Deletion	Chr7	8165312	8165403	91	OsKitaake07g089300
Deletion	Chr11	8890001	9247000	356999	17
Deletion	Chr8	9047542	9047553	11
Deletion	Chr8	9048662	9048664	2
Deletion	Chr5	12380137	12380144	7
Deletion	Chr5	12424107	12424108	1
Deletion	Chr7	12991964	12992031	67
Deletion	Chr2	15996897	15997181	284
Deletion	Chr4	17767337	17767450	113
Deletion	Chr3	18909296	18909298	2
Deletion	Chr9	19343440	19343445	5
Deletion	Chr2	19462204	19462314	110
Deletion	Chr2	21617571	21617786	215
Deletion	Chr4	28332932	28332938	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2070866	2250145	OsKitaake03g032500
Inversion	Chr5	17401865	17635181

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes