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Mutant Information

Mutant Name	FN-163 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-163 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5363442 G-A Hetero INTRON
SBS Chr1 12927094 C-A Hetero INTERGENIC
SBS Chr1 30286131 T-C Hetero INTRON
SBS Chr1 33786506 A-T Hetero INTRON
SBS Chr3 20302572 C-T Hetero INTERGENIC
SBS Chr4 1788359 C-T Hetero INTERGENIC
SBS Chr4 16496500 C-T Hetero INTRON
SBS Chr4 18456973 G-C Hetero INTERGENIC
SBS Chr4 24549603 G-T Hetero INTERGENIC
SBS Chr4 29352072 A-T Hetero INTERGENIC
SBS Chr5 5844213 A-G Hetero INTERGENIC
SBS Chr5 28356745 T-C Hetero INTERGENIC
SBS Chr6 15855226 G-A Hetero INTERGENIC
SBS Chr7 5376781 C-T Homo INTERGENIC
SBS Chr7 5485183 A-C Homo UTR_5_PRIME
SBS Chr7 11414323 C-T Hetero INTERGENIC
SBS Chr8 12818373 G-A Hetero INTERGENIC
SBS Chr8 22272720 T-A Hetero INTERGENIC
SBS Chr8 22409309 A-G Hetero INTERGENIC
SBS Chr9 9457727 A-G Homo INTERGENIC
SBS Chr10 5258380 T-A Hetero INTERGENIC
SBS Chr10 7341608 C-T Hetero INTERGENIC
SBS Chr10 7835763 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g049700
SBS Chr10 8034156 C-T Hetero INTERGENIC
SBS Chr10 9034634 A-G Hetero INTERGENIC
SBS Chr10 10112944 T-G Hetero INTRON
SBS Chr11 6866493 C-T Homo INTERGENIC
SBS Chr11 8737716 G-C Homo INTERGENIC
SBS Chr11 16261513 C-T Hetero INTERGENIC
SBS Chr11 21415509 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g169101
SBS Chr12 7732726 C-G Hetero INTERGENIC
SBS Chr12 12411883 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1350900 1350906 6 OsKitaake02g020700
Deletion Chr10 1731477 1731483 6
Deletion Chr1 3648003 3648004 1
Deletion Chr1 5080577 5080579 2
Deletion Chr10 11331254 11331256 2
Deletion Chr11 12526006 12526161 155
Deletion Chr7 14030617 14030818 201 OsKitaake07g121100
Deletion Chr3 17544001 17700000 155999 16
Deletion Chr12 18745651 18745652 1
Deletion Chr2 20473551 20473552 1
Deletion Chr1 23768918 23768919 1
Deletion Chr12 24503043 24503111 68
Deletion Chr11 27541328 27541398 70
Deletion Chr7 28070064 28070065 1
Deletion Chr4 30058244 30058246 2
Deletion Chr1 43985976 43985978 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 11524606 11524609 2
Insertion Chr5 12424107 12424109 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6902464 6905377
Inversion Chr1 11420819 11431162 OsKitaake01g139600
Inversion Chr1 11420850 11431181 OsKitaake01g139600
Inversion Chr3 17543243 17696404 OsKitaake03g215800
Inversion Chr3 17695739 17696402 OsKitaake03g217400

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 17045174 Chr7 6905375

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5363442	G-A	Hetero	INTRON
SBS	Chr1	12927094	C-A	Hetero	INTERGENIC
SBS	Chr1	30286131	T-C	Hetero	INTRON
SBS	Chr1	33786506	A-T	Hetero	INTRON
SBS	Chr3	20302572	C-T	Hetero	INTERGENIC
SBS	Chr4	1788359	C-T	Hetero	INTERGENIC
SBS	Chr4	16496500	C-T	Hetero	INTRON
SBS	Chr4	18456973	G-C	Hetero	INTERGENIC
SBS	Chr4	24549603	G-T	Hetero	INTERGENIC
SBS	Chr4	29352072	A-T	Hetero	INTERGENIC
SBS	Chr5	5844213	A-G	Hetero	INTERGENIC
SBS	Chr5	28356745	T-C	Hetero	INTERGENIC
SBS	Chr6	15855226	G-A	Hetero	INTERGENIC
SBS	Chr7	5376781	C-T	Homo	INTERGENIC
SBS	Chr7	5485183	A-C	Homo	UTR_5_PRIME
SBS	Chr7	11414323	C-T	Hetero	INTERGENIC
SBS	Chr8	12818373	G-A	Hetero	INTERGENIC
SBS	Chr8	22272720	T-A	Hetero	INTERGENIC
SBS	Chr8	22409309	A-G	Hetero	INTERGENIC
SBS	Chr9	9457727	A-G	Homo	INTERGENIC
SBS	Chr10	5258380	T-A	Hetero	INTERGENIC
SBS	Chr10	7341608	C-T	Hetero	INTERGENIC
SBS	Chr10	7835763	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g049700
SBS	Chr10	8034156	C-T	Hetero	INTERGENIC
SBS	Chr10	9034634	A-G	Hetero	INTERGENIC
SBS	Chr10	10112944	T-G	Hetero	INTRON
SBS	Chr11	6866493	C-T	Homo	INTERGENIC
SBS	Chr11	8737716	G-C	Homo	INTERGENIC
SBS	Chr11	16261513	C-T	Hetero	INTERGENIC
SBS	Chr11	21415509	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g169101
SBS	Chr12	7732726	C-G	Hetero	INTERGENIC
SBS	Chr12	12411883	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1350900	1350906	6	OsKitaake02g020700
Deletion	Chr10	1731477	1731483	6
Deletion	Chr1	3648003	3648004	1
Deletion	Chr1	5080577	5080579	2
Deletion	Chr10	11331254	11331256	2
Deletion	Chr11	12526006	12526161	155
Deletion	Chr7	14030617	14030818	201	OsKitaake07g121100
Deletion	Chr3	17544001	17700000	155999	16
Deletion	Chr12	18745651	18745652	1
Deletion	Chr2	20473551	20473552	1
Deletion	Chr1	23768918	23768919	1
Deletion	Chr12	24503043	24503111	68
Deletion	Chr11	27541328	27541398	70
Deletion	Chr7	28070064	28070065	1
Deletion	Chr4	30058244	30058246	2
Deletion	Chr1	43985976	43985978	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6902464	6905377
Inversion	Chr1	11420819	11431162	OsKitaake01g139600
Inversion	Chr1	11420850	11431181	OsKitaake01g139600
Inversion	Chr3	17543243	17696404	OsKitaake03g215800
Inversion	Chr3	17695739	17696402	OsKitaake03g217400

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Variant Type

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Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

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End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

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Position 1

Chromosome

Position 2

Number of Genes