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Mutant Information

Mutant Name	FN-164 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-164 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15559679 A-T Homo INTERGENIC
SBS Chr1 37071147 G-A Homo INTERGENIC
SBS Chr1 41797576 A-T Hetero INTERGENIC
SBS Chr2 3963720 G-A Homo INTERGENIC
SBS Chr2 13959403 C-T Hetero INTRON
SBS Chr2 24927224 C-T Hetero INTERGENIC
SBS Chr3 4394650 C-T Hetero INTRON
SBS Chr3 8325768 C-G Hetero INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 30825642 G-T Hetero INTRON
SBS Chr3 31540133 G-A Hetero INTERGENIC
SBS Chr4 4192427 G-A Hetero INTERGENIC
SBS Chr4 4734814 G-T Hetero INTERGENIC
SBS Chr4 7097998 T-A Hetero INTERGENIC
SBS Chr4 7191330 G-A Hetero INTRON
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 24852057 G-T Homo INTERGENIC
SBS Chr4 27436412 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g200366
SBS Chr4 35814916 G-T Homo INTERGENIC
SBS Chr5 12131804 A-T Hetero INTERGENIC
SBS Chr5 15483703 G-C Hetero INTERGENIC
SBS Chr5 24362799 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g196700
SBS Chr6 19207776 A-T Hetero UTR_3_PRIME
SBS Chr6 19771830 G-T Hetero INTRON
SBS Chr6 30761705 T-C Hetero INTRON
SBS Chr7 5524176 C-T Hetero INTERGENIC
SBS Chr7 6080625 G-C Hetero INTERGENIC
SBS Chr7 13567566 C-T Hetero INTERGENIC
SBS Chr7 15190070 C-T Hetero INTERGENIC
SBS Chr7 17243347 C-T Hetero INTERGENIC
SBS Chr7 18924593 T-C Homo INTERGENIC
SBS Chr7 19037345 C-T Homo INTERGENIC
SBS Chr7 23916029 T-A Hetero INTERGENIC
SBS Chr7 28165562 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g265500
SBS Chr8 17644329 G-A Hetero INTERGENIC
SBS Chr8 24244320 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g187600
SBS Chr9 1681945 C-T Hetero INTERGENIC
SBS Chr10 1755966 G-C Homo INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr10 21564223 C-A Homo NON_SYNONYMOUS_CODING OsKitaake10g171800
SBS Chr10 22025730 G-T Homo UTR_3_PRIME
SBS Chr11 1119030 A-G Hetero INTERGENIC
SBS Chr12 1190723 C-T Homo INTERGENIC
SBS Chr12 7831920 A-T Homo INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 807399 807411 12
Deletion Chr11 1126424 1126435 11
Deletion Chr7 2132001 2376000 243999 34
Deletion Chr2 2691880 2691889 9 OsKitaake02g038700
Deletion Chr1 2930550 2930551 1
Deletion Chr10 2975236 2975252 16
Deletion Chr3 3158199 3158205 6
Deletion Chr4 3320001 3437000 116999 2
Deletion Chr6 4209054 4209064 10
Deletion Chr5 6997137 6997141 4
Deletion Chr4 7651937 7651963 26
Deletion Chr1 7784174 7784180 6
Deletion Chr4 10438721 10438723 2
Deletion Chr5 12041232 12041233 1
Deletion Chr1 14418050 14418069 19
Deletion Chr2 14732926 14732945 19
Deletion Chr10 14820346 14820355 9
Deletion Chr1 15562384 15562389 5
Deletion Chr2 16685001 17004000 318999 15
Deletion Chr11 17961671 17961673 2
Deletion Chr9 20690963 20690965 2
Deletion Chr1 21230820 21230824 4
Deletion Chr2 25855400 25855413 13
Deletion Chr4 27112359 27112383 24 OsKitaake04g197100
Deletion Chr4 27341001 27358000 16999 3
Deletion Chr4 27724504 27724508 4
Deletion Chr1 29998943 29998945 2
Deletion Chr2 32943462 32943463 1 OsKitaake02g338600
Deletion Chr3 36040019 36040023 4
Deletion Chr3 36538145 36538155 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 32967285 32967292 6

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1740624 2133836 2
Inversion Chr7 1740637 2380605 2
Inversion Chr2 16686527 17504606 OsKitaake02g175800
Inversion Chr2 17001816 17504765 OsKitaake02g175800
Inversion Chr4 27344951 27496932 2
Inversion Chr4 27358149 27496938 OsKitaake04g201100

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 1159768 Chr2 25561494
Translocation Chr6 1354149 Chr2 25561740
Translocation Chr11 1659972 Chr5 24208786 OsKitaake11g022100
Translocation Chr11 1711873 Chr5 24215580
Translocation Chr10 22849834 Chr9 20690520 OsKitaake10g190400
Translocation Chr10 22849841 Chr9 20690296 OsKitaake10g190400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15559679	A-T	Homo	INTERGENIC
SBS	Chr1	37071147	G-A	Homo	INTERGENIC
SBS	Chr1	41797576	A-T	Hetero	INTERGENIC
SBS	Chr2	3963720	G-A	Homo	INTERGENIC
SBS	Chr2	13959403	C-T	Hetero	INTRON
SBS	Chr2	24927224	C-T	Hetero	INTERGENIC
SBS	Chr3	4394650	C-T	Hetero	INTRON
SBS	Chr3	8325768	C-G	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	30825642	G-T	Hetero	INTRON
SBS	Chr3	31540133	G-A	Hetero	INTERGENIC
SBS	Chr4	4192427	G-A	Hetero	INTERGENIC
SBS	Chr4	4734814	G-T	Hetero	INTERGENIC
SBS	Chr4	7097998	T-A	Hetero	INTERGENIC
SBS	Chr4	7191330	G-A	Hetero	INTRON
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	24852057	G-T	Homo	INTERGENIC
SBS	Chr4	27436412	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g200366
SBS	Chr4	35814916	G-T	Homo	INTERGENIC
SBS	Chr5	12131804	A-T	Hetero	INTERGENIC
SBS	Chr5	15483703	G-C	Hetero	INTERGENIC
SBS	Chr5	24362799	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g196700
SBS	Chr6	19207776	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	19771830	G-T	Hetero	INTRON
SBS	Chr6	30761705	T-C	Hetero	INTRON
SBS	Chr7	5524176	C-T	Hetero	INTERGENIC
SBS	Chr7	6080625	G-C	Hetero	INTERGENIC
SBS	Chr7	13567566	C-T	Hetero	INTERGENIC
SBS	Chr7	15190070	C-T	Hetero	INTERGENIC
SBS	Chr7	17243347	C-T	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Homo	INTERGENIC
SBS	Chr7	19037345	C-T	Homo	INTERGENIC
SBS	Chr7	23916029	T-A	Hetero	INTERGENIC
SBS	Chr7	28165562	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g265500
SBS	Chr8	17644329	G-A	Hetero	INTERGENIC
SBS	Chr8	24244320	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g187600
SBS	Chr9	1681945	C-T	Hetero	INTERGENIC
SBS	Chr10	1755966	G-C	Homo	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr10	21564223	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g171800
SBS	Chr10	22025730	G-T	Homo	UTR_3_PRIME
SBS	Chr11	1119030	A-G	Hetero	INTERGENIC
SBS	Chr12	1190723	C-T	Homo	INTERGENIC
SBS	Chr12	7831920	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	807399	807411	12
Deletion	Chr11	1126424	1126435	11
Deletion	Chr7	2132001	2376000	243999	34
Deletion	Chr2	2691880	2691889	9	OsKitaake02g038700
Deletion	Chr1	2930550	2930551	1
Deletion	Chr10	2975236	2975252	16
Deletion	Chr3	3158199	3158205	6
Deletion	Chr4	3320001	3437000	116999	2
Deletion	Chr6	4209054	4209064	10
Deletion	Chr5	6997137	6997141	4
Deletion	Chr4	7651937	7651963	26
Deletion	Chr1	7784174	7784180	6
Deletion	Chr4	10438721	10438723	2
Deletion	Chr5	12041232	12041233	1
Deletion	Chr1	14418050	14418069	19
Deletion	Chr2	14732926	14732945	19
Deletion	Chr10	14820346	14820355	9
Deletion	Chr1	15562384	15562389	5
Deletion	Chr2	16685001	17004000	318999	15
Deletion	Chr11	17961671	17961673	2
Deletion	Chr9	20690963	20690965	2
Deletion	Chr1	21230820	21230824	4
Deletion	Chr2	25855400	25855413	13
Deletion	Chr4	27112359	27112383	24	OsKitaake04g197100
Deletion	Chr4	27341001	27358000	16999	3
Deletion	Chr4	27724504	27724508	4
Deletion	Chr1	29998943	29998945	2
Deletion	Chr2	32943462	32943463	1	OsKitaake02g338600
Deletion	Chr3	36040019	36040023	4
Deletion	Chr3	36538145	36538155	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1740624	2133836	2
Inversion	Chr7	1740637	2380605	2
Inversion	Chr2	16686527	17504606	OsKitaake02g175800
Inversion	Chr2	17001816	17504765	OsKitaake02g175800
Inversion	Chr4	27344951	27496932	2
Inversion	Chr4	27358149	27496938	OsKitaake04g201100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes