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Mutant Information

Mutant Name	FN-165 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-165 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20026565 T-C Hetero INTERGENIC
SBS Chr2 8695680 G-A Hetero INTERGENIC
SBS Chr2 26064125 G-A Hetero INTERGENIC
SBS Chr2 36120437 A-G Hetero INTERGENIC
SBS Chr2 36436806 T-A Homo INTERGENIC
SBS Chr3 11240912 T-A Hetero INTRON
SBS Chr3 30330900 A-G Homo INTERGENIC
SBS Chr4 13743485 C-T Homo INTERGENIC
SBS Chr4 18944362 C-A Homo INTERGENIC
SBS Chr4 29812872 G-C Hetero INTERGENIC
SBS Chr4 32222249 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g256400
SBS Chr4 32222250 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g256400
SBS Chr6 4789219 A-T Hetero INTERGENIC
SBS Chr6 7824850 C-T Hetero INTERGENIC
SBS Chr7 10557329 C-A Hetero INTERGENIC
SBS Chr8 16756077 C-T Hetero INTERGENIC
SBS Chr9 2727561 C-G Hetero INTERGENIC
SBS Chr11 3706379 G-A Hetero INTERGENIC
SBS Chr11 5037129 C-T Homo INTERGENIC
SBS Chr11 12462857 A-T Hetero INTERGENIC
SBS Chr11 18713678 T-C Hetero INTERGENIC
SBS Chr11 25040196 G-T Homo INTERGENIC
SBS Chr12 7077765 C-A Hetero INTERGENIC
SBS Chr12 26372577 G-A Hetero INTERGENIC

Deletions: 59

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 351001 375000 23999 OsKitaake01g005200
Deletion Chr5 1369001 1381000 11999 OsKitaake05g017100
Deletion Chr2 1643001 1653000 9999 OsKitaake02g025800
Deletion Chr3 1677001 1689000 11999 OsKitaake03g023750
Deletion Chr12 3397001 3405000 7999 OsKitaake12g048100
Deletion Chr7 3604001 3613000 8999 OsKitaake07g046000
Deletion Chr5 3639039 3639040 1
Deletion Chr6 4190001 4211000 20999 2
Deletion Chr2 4878642 4878643 1 OsKitaake02g067301
Deletion Chr7 5426001 5443000 16999 OsKitaake07g066200
Deletion Chr3 6095001 6109000 13999 OsKitaake03g087400
Deletion Chr9 6271001 6280000 8999 3
Deletion Chr10 8269928 8269930 2
Deletion Chr5 8449001 8473000 23999 2
Deletion Chr2 8603001 8612000 8999 OsKitaake02g109400
Deletion Chr8 9351001 9359000 7999
Deletion Chr9 9484540 9484542 2
Deletion Chr1 9644001 9660000 15999 OsKitaake01g123400
Deletion Chr10 9880646 9880648 2 OsKitaake10g057700
Deletion Chr10 10162420 10162427 7
Deletion Chr12 10953001 10962000 8999 OsKitaake12g101500
Deletion Chr8 11430001 11488000 57999 3
Deletion Chr8 12533001 12543000 9999 OsKitaake08g107500
Deletion Chr1 13460001 13470000 9999 OsKitaake01g156600
Deletion Chr10 15183001 15190000 6999 2
Deletion Chr1 16662001 16684000 21999 OsKitaake01g177400
Deletion Chr4 17392214 17392217 3
Deletion Chr12 18357941 18358109 168
Deletion Chr10 19374001 19386000 11999 OsKitaake10g141100
Deletion Chr8 19384133 19384135 2
Deletion Chr4 19436001 19448000 11999 OsKitaake04g099601
Deletion Chr8 21299001 21309000 9999 OsKitaake08g159900
Deletion Chr11 22110440 22110442 2
Deletion Chr11 22573001 22581000 7999 OsKitaake11g179100
Deletion Chr9 22646779 22646788 9
Deletion Chr4 22736001 22755000 18999 7
Deletion Chr3 22979001 22989000 9999
Deletion Chr10 23136001 23148000 11999 OsKitaake10g195250
Deletion Chr1 23255001 23270000 14999 OsKitaake01g222400
Deletion Chr12 23319238 23319240 2
Deletion Chr3 24083186 24083187 1
Deletion Chr2 24408001 24428000 19999
Deletion Chr4 24462001 24474000 11999
Deletion Chr8 26355001 26366000 10999 2
Deletion Chr12 26721001 26734000 12999 OsKitaake12g222100
Deletion Chr5 26956001 26967000 10999 OsKitaake05g241500
Deletion Chr1 27240001 27248000 7999 2
Deletion Chr3 27376758 27376759 1 OsKitaake03g282400
Deletion Chr4 27663001 27673000 9999 OsKitaake04g203600
Deletion Chr6 27918001 27936000 17999 OsKitaake06g253400
Deletion Chr3 27999001 28010000 10999 OsKitaake03g289900
Deletion Chr4 28263897 28263898 1
Deletion Chr3 30871001 30880000 8999 2
Deletion Chr4 31795001 31805000 9999
Deletion Chr1 33740001 33750000 9999 OsKitaake01g346400
Deletion Chr2 34441001 34448000 6999 OsKitaake02g358200
Deletion Chr1 36304001 36313000 8999
Deletion Chr1 38703001 38712000 8999 OsKitaake01g413900
Deletion Chr1 42699001 42712000 12999

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 12065234 12065237 2
Insertion Chr5 19303882 19303885 2
Insertion Chr10 23850733 23850735 1
Insertion Chr5 9944344 9944346 1
Insertion Chr5 30228119 30228121 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 26158970 26877114

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 12706494 Chr5 23278409
Translocation Chr12 12706503 Chr5 23276294

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20026565	T-C	Hetero	INTERGENIC
SBS	Chr2	8695680	G-A	Hetero	INTERGENIC
SBS	Chr2	26064125	G-A	Hetero	INTERGENIC
SBS	Chr2	36120437	A-G	Hetero	INTERGENIC
SBS	Chr2	36436806	T-A	Homo	INTERGENIC
SBS	Chr3	11240912	T-A	Hetero	INTRON
SBS	Chr3	30330900	A-G	Homo	INTERGENIC
SBS	Chr4	13743485	C-T	Homo	INTERGENIC
SBS	Chr4	18944362	C-A	Homo	INTERGENIC
SBS	Chr4	29812872	G-C	Hetero	INTERGENIC
SBS	Chr4	32222249	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g256400
SBS	Chr4	32222250	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g256400
SBS	Chr6	4789219	A-T	Hetero	INTERGENIC
SBS	Chr6	7824850	C-T	Hetero	INTERGENIC
SBS	Chr7	10557329	C-A	Hetero	INTERGENIC
SBS	Chr8	16756077	C-T	Hetero	INTERGENIC
SBS	Chr9	2727561	C-G	Hetero	INTERGENIC
SBS	Chr11	3706379	G-A	Hetero	INTERGENIC
SBS	Chr11	5037129	C-T	Homo	INTERGENIC
SBS	Chr11	12462857	A-T	Hetero	INTERGENIC
SBS	Chr11	18713678	T-C	Hetero	INTERGENIC
SBS	Chr11	25040196	G-T	Homo	INTERGENIC
SBS	Chr12	7077765	C-A	Hetero	INTERGENIC
SBS	Chr12	26372577	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	351001	375000	23999	OsKitaake01g005200
Deletion	Chr5	1369001	1381000	11999	OsKitaake05g017100
Deletion	Chr2	1643001	1653000	9999	OsKitaake02g025800
Deletion	Chr3	1677001	1689000	11999	OsKitaake03g023750
Deletion	Chr12	3397001	3405000	7999	OsKitaake12g048100
Deletion	Chr7	3604001	3613000	8999	OsKitaake07g046000
Deletion	Chr5	3639039	3639040	1
Deletion	Chr6	4190001	4211000	20999	2
Deletion	Chr2	4878642	4878643	1	OsKitaake02g067301
Deletion	Chr7	5426001	5443000	16999	OsKitaake07g066200
Deletion	Chr3	6095001	6109000	13999	OsKitaake03g087400
Deletion	Chr9	6271001	6280000	8999	3
Deletion	Chr10	8269928	8269930	2
Deletion	Chr5	8449001	8473000	23999	2
Deletion	Chr2	8603001	8612000	8999	OsKitaake02g109400
Deletion	Chr8	9351001	9359000	7999
Deletion	Chr9	9484540	9484542	2
Deletion	Chr1	9644001	9660000	15999	OsKitaake01g123400
Deletion	Chr10	9880646	9880648	2	OsKitaake10g057700
Deletion	Chr10	10162420	10162427	7
Deletion	Chr12	10953001	10962000	8999	OsKitaake12g101500
Deletion	Chr8	11430001	11488000	57999	3
Deletion	Chr8	12533001	12543000	9999	OsKitaake08g107500
Deletion	Chr1	13460001	13470000	9999	OsKitaake01g156600
Deletion	Chr10	15183001	15190000	6999	2
Deletion	Chr1	16662001	16684000	21999	OsKitaake01g177400
Deletion	Chr4	17392214	17392217	3
Deletion	Chr12	18357941	18358109	168
Deletion	Chr10	19374001	19386000	11999	OsKitaake10g141100
Deletion	Chr8	19384133	19384135	2
Deletion	Chr4	19436001	19448000	11999	OsKitaake04g099601
Deletion	Chr8	21299001	21309000	9999	OsKitaake08g159900
Deletion	Chr11	22110440	22110442	2
Deletion	Chr11	22573001	22581000	7999	OsKitaake11g179100
Deletion	Chr9	22646779	22646788	9
Deletion	Chr4	22736001	22755000	18999	7
Deletion	Chr3	22979001	22989000	9999
Deletion	Chr10	23136001	23148000	11999	OsKitaake10g195250
Deletion	Chr1	23255001	23270000	14999	OsKitaake01g222400
Deletion	Chr12	23319238	23319240	2
Deletion	Chr3	24083186	24083187	1
Deletion	Chr2	24408001	24428000	19999
Deletion	Chr4	24462001	24474000	11999
Deletion	Chr8	26355001	26366000	10999	2
Deletion	Chr12	26721001	26734000	12999	OsKitaake12g222100
Deletion	Chr5	26956001	26967000	10999	OsKitaake05g241500
Deletion	Chr1	27240001	27248000	7999	2
Deletion	Chr3	27376758	27376759	1	OsKitaake03g282400
Deletion	Chr4	27663001	27673000	9999	OsKitaake04g203600
Deletion	Chr6	27918001	27936000	17999	OsKitaake06g253400
Deletion	Chr3	27999001	28010000	10999	OsKitaake03g289900
Deletion	Chr4	28263897	28263898	1
Deletion	Chr3	30871001	30880000	8999	2
Deletion	Chr4	31795001	31805000	9999
Deletion	Chr1	33740001	33750000	9999	OsKitaake01g346400
Deletion	Chr2	34441001	34448000	6999	OsKitaake02g358200
Deletion	Chr1	36304001	36313000	8999
Deletion	Chr1	38703001	38712000	8999	OsKitaake01g413900
Deletion	Chr1	42699001	42712000	12999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26158970	26877114

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes