Search Kitaake

Mutant Information

Mutant Name	FN-166 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-166 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4191631 T-A Hetero INTERGENIC
SBS Chr1 7898425 T-G Hetero STOP_LOST OsKitaake01g099100
SBS Chr1 20008389 G-T Hetero INTERGENIC
SBS Chr1 20778932 G-C Hetero INTERGENIC
SBS Chr1 29654129 C-T Homo INTERGENIC
SBS Chr1 31049303 C-T Hetero INTRON
SBS Chr2 11674544 C-G Hetero INTRON
SBS Chr2 14703278 G-A Hetero INTERGENIC
SBS Chr2 23507758 A-T Hetero INTERGENIC
SBS Chr2 25781035 G-A Hetero INTERGENIC
SBS Chr2 25783380 C-A Hetero INTERGENIC
SBS Chr2 25783886 A-C Hetero INTERGENIC
SBS Chr3 14208330 T-C Hetero INTERGENIC
SBS Chr4 6425217 C-A Hetero INTERGENIC
SBS Chr4 14908611 G-A Homo INTERGENIC
SBS Chr4 20236243 A-G Hetero INTERGENIC
SBS Chr4 22791796 G-A Hetero INTERGENIC
SBS Chr4 28288519 G-A Hetero INTERGENIC
SBS Chr4 28726237 G-T Homo INTERGENIC
SBS Chr4 32119427 A-C Hetero INTERGENIC
SBS Chr5 1549115 G-A Hetero INTRON
SBS Chr5 3246778 C-T Hetero UTR_3_PRIME
SBS Chr5 20610674 T-A Homo INTERGENIC
SBS Chr5 20916175 C-T Homo INTERGENIC
SBS Chr5 21154986 G-A Hetero INTERGENIC
SBS Chr6 1839796 A-T Hetero INTERGENIC
SBS Chr6 13391445 C-A Hetero INTERGENIC
SBS Chr6 13497677 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g141900
SBS Chr6 16541352 T-G Hetero INTERGENIC
SBS Chr7 15924199 G-A Hetero INTERGENIC
SBS Chr7 21175186 G-A Homo INTERGENIC
SBS Chr8 8581098 G-A Homo INTERGENIC
SBS Chr8 11373422 C-T Homo INTRON
SBS Chr9 12118621 T-G Homo INTERGENIC
SBS Chr11 5136442 C-G Homo INTERGENIC
SBS Chr11 6159838 G-A Hetero INTERGENIC
SBS Chr11 9200221 G-A Hetero INTERGENIC
SBS Chr11 13063996 C-T Homo INTERGENIC
SBS Chr11 14291272 T-C Homo INTRON
SBS Chr11 20400200 A-C Homo INTRON
SBS Chr11 21095637 T-A Homo INTERGENIC
SBS Chr11 26819444 C-T Hetero INTERGENIC
SBS Chr11 27323622 G-A Hetero INTERGENIC
SBS Chr11 29345049 A-G Hetero INTERGENIC
SBS Chr12 16000073 G-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 15154 15155 1
Deletion Chr1 1608388 1608390 2
Deletion Chr5 3245515 3245516 1
Deletion Chr3 5511359 5511361 2
Deletion Chr3 6028998 6028999 1
Deletion Chr10 8671195 8671360 165
Deletion Chr2 10151392 10151400 8
Deletion Chr9 14925917 14925932 15
Deletion Chr6 16443334 16443336 2
Deletion Chr5 16754229 16754240 11
Deletion Chr2 18811209 18811212 3
Deletion Chr12 20062761 20062762 1
Deletion Chr12 20756315 20756316 1 OsKitaake12g162200
Deletion Chr4 21016898 21016901 3
Deletion Chr8 23930100 23930125 25 OsKitaake08g184300
Deletion Chr7 25826617 25826618 1
Deletion Chr7 27128574 27128575 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 23340723 23340725 1
Insertion Chr1 24556767 24556769 1 OsKitaake01g237000
Insertion Chr2 29292738 29292741 2 OsKitaake02g294500
Insertion Chr3 26310606 26310609 2
Insertion Chr6 4888 4891 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 10806718 11472538
Inversion Chr3 10874867 11472539 OsKitaake03g149100
Inversion Chr9 20234217 20297341
Inversion Chr9 20234234 20297360

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 6362197 Chr5 24554058
Translocation Chr6 6362199 Chr5 24554526

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4191631	T-A	Hetero	INTERGENIC
SBS	Chr1	7898425	T-G	Hetero	STOP_LOST	OsKitaake01g099100
SBS	Chr1	20008389	G-T	Hetero	INTERGENIC
SBS	Chr1	20778932	G-C	Hetero	INTERGENIC
SBS	Chr1	29654129	C-T	Homo	INTERGENIC
SBS	Chr1	31049303	C-T	Hetero	INTRON
SBS	Chr2	11674544	C-G	Hetero	INTRON
SBS	Chr2	14703278	G-A	Hetero	INTERGENIC
SBS	Chr2	23507758	A-T	Hetero	INTERGENIC
SBS	Chr2	25781035	G-A	Hetero	INTERGENIC
SBS	Chr2	25783380	C-A	Hetero	INTERGENIC
SBS	Chr2	25783886	A-C	Hetero	INTERGENIC
SBS	Chr3	14208330	T-C	Hetero	INTERGENIC
SBS	Chr4	6425217	C-A	Hetero	INTERGENIC
SBS	Chr4	14908611	G-A	Homo	INTERGENIC
SBS	Chr4	20236243	A-G	Hetero	INTERGENIC
SBS	Chr4	22791796	G-A	Hetero	INTERGENIC
SBS	Chr4	28288519	G-A	Hetero	INTERGENIC
SBS	Chr4	28726237	G-T	Homo	INTERGENIC
SBS	Chr4	32119427	A-C	Hetero	INTERGENIC
SBS	Chr5	1549115	G-A	Hetero	INTRON
SBS	Chr5	3246778	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	20610674	T-A	Homo	INTERGENIC
SBS	Chr5	20916175	C-T	Homo	INTERGENIC
SBS	Chr5	21154986	G-A	Hetero	INTERGENIC
SBS	Chr6	1839796	A-T	Hetero	INTERGENIC
SBS	Chr6	13391445	C-A	Hetero	INTERGENIC
SBS	Chr6	13497677	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g141900
SBS	Chr6	16541352	T-G	Hetero	INTERGENIC
SBS	Chr7	15924199	G-A	Hetero	INTERGENIC
SBS	Chr7	21175186	G-A	Homo	INTERGENIC
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr8	11373422	C-T	Homo	INTRON
SBS	Chr9	12118621	T-G	Homo	INTERGENIC
SBS	Chr11	5136442	C-G	Homo	INTERGENIC
SBS	Chr11	6159838	G-A	Hetero	INTERGENIC
SBS	Chr11	9200221	G-A	Hetero	INTERGENIC
SBS	Chr11	13063996	C-T	Homo	INTERGENIC
SBS	Chr11	14291272	T-C	Homo	INTRON
SBS	Chr11	20400200	A-C	Homo	INTRON
SBS	Chr11	21095637	T-A	Homo	INTERGENIC
SBS	Chr11	26819444	C-T	Hetero	INTERGENIC
SBS	Chr11	27323622	G-A	Hetero	INTERGENIC
SBS	Chr11	29345049	A-G	Hetero	INTERGENIC
SBS	Chr12	16000073	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	15154	15155	1
Deletion	Chr1	1608388	1608390	2
Deletion	Chr5	3245515	3245516	1
Deletion	Chr3	5511359	5511361	2
Deletion	Chr3	6028998	6028999	1
Deletion	Chr10	8671195	8671360	165
Deletion	Chr2	10151392	10151400	8
Deletion	Chr9	14925917	14925932	15
Deletion	Chr6	16443334	16443336	2
Deletion	Chr5	16754229	16754240	11
Deletion	Chr2	18811209	18811212	3
Deletion	Chr12	20062761	20062762	1
Deletion	Chr12	20756315	20756316	1	OsKitaake12g162200
Deletion	Chr4	21016898	21016901	3
Deletion	Chr8	23930100	23930125	25	OsKitaake08g184300
Deletion	Chr7	25826617	25826618	1
Deletion	Chr7	27128574	27128575	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	10806718	11472538
Inversion	Chr3	10874867	11472539	OsKitaake03g149100
Inversion	Chr9	20234217	20297341
Inversion	Chr9	20234234	20297360

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes