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Mutant Information

Mutant Name	FN-167 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-167 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 29369413 A-T Homo INTERGENIC
SBS Chr2 6031841 C-A Hetero INTERGENIC
SBS Chr2 6031842 G-A Hetero INTERGENIC
SBS Chr2 11668268 C-G Hetero INTERGENIC
SBS Chr2 14921990 C-A Hetero INTERGENIC
SBS Chr2 15824946 C-T Hetero INTERGENIC
SBS Chr2 35269036 A-T Hetero INTERGENIC
SBS Chr3 4266725 T-A Hetero INTRON
SBS Chr3 4266726 T-A Hetero INTRON
SBS Chr3 4266838 A-G Hetero INTRON
SBS Chr3 4296797 C-T Hetero INTERGENIC
SBS Chr3 15860326 G-A Hetero INTERGENIC
SBS Chr3 18367685 A-G Hetero INTERGENIC
SBS Chr4 1538502 C-T Hetero INTERGENIC
SBS Chr4 5876940 T-C Hetero INTERGENIC
SBS Chr4 6204168 A-C Homo INTERGENIC
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr4 16558443 C-T Hetero INTERGENIC
SBS Chr4 30366549 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 30854569 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g239200
SBS Chr6 5560696 T-C Hetero INTRON
SBS Chr6 10235688 A-T Hetero INTRON
SBS Chr6 10235689 A-T Hetero INTRON
SBS Chr7 4042771 C-T Hetero INTERGENIC
SBS Chr7 13625688 C-T Hetero INTERGENIC
SBS Chr7 14396634 C-T Homo INTERGENIC
SBS Chr7 22018913 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g185200
SBS Chr8 17025031 C-T Hetero INTERGENIC
SBS Chr8 20632251 A-T Hetero INTRON
SBS Chr9 1641032 G-A Hetero INTERGENIC
SBS Chr9 3891139 C-T Hetero INTERGENIC
SBS Chr9 6102234 G-A Homo INTERGENIC
SBS Chr9 6360806 G-C Hetero INTERGENIC
SBS Chr9 14076949 G-C Hetero INTERGENIC
SBS Chr9 16599610 G-A Hetero INTERGENIC
SBS Chr10 4691523 C-T Hetero INTERGENIC
SBS Chr11 1704714 C-T Hetero INTERGENIC
SBS Chr11 12384631 C-A Hetero INTERGENIC
SBS Chr12 6761219 A-C Hetero INTERGENIC
SBS Chr12 8493162 G-T Homo INTERGENIC
SBS Chr12 16255275 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 19051634 G-T Homo INTERGENIC
SBS Chr12 25215319 T-C Hetero INTRON
SBS Chr12 26978260 G-A Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 641584 641588 4
Deletion Chr2 4278526 4278532 6
Deletion Chr11 5171792 5171795 3
Deletion Chr5 5603128 5603133 5
Deletion Chr10 5691001 5843000 151999 8
Deletion Chr6 6289662 6289669 7
Deletion Chr9 8087929 8087935 6
Deletion Chr5 8510115 8510135 20
Deletion Chr7 9872426 9872430 4
Deletion Chr12 11369624 11369634 10
Deletion Chr10 11838133 11838134 1
Deletion Chr7 11947275 11947289 14
Deletion Chr11 13294538 13294542 4
Deletion Chr11 13997001 14048000 50999 2
Deletion Chr6 14538323 14538324 1
Deletion Chr2 14747241 14747243 2
Deletion Chr2 15900609 15900617 8
Deletion Chr12 17251066 17251070 4
Deletion Chr5 18297977 18297990 13
Deletion Chr3 19720173 19720183 10
Deletion Chr7 20979025 20979026 1
Deletion Chr7 23720430 23720435 5
Deletion Chr5 24474211 24474217 6
Deletion Chr1 24764154 24764158 4
Deletion Chr4 24860068 24860072 4
Deletion Chr4 24936754 24936755 1
Deletion Chr4 26085771 26085772 1
Deletion Chr12 26385175 26385176 1
Deletion Chr5 27684170 27684172 2
Deletion Chr2 29836579 29836586 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2837653 2837656 2
Insertion Chr9 18889134 18889136 1 OsKitaake09g150400

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 4864711 4934064 OsKitaake10g036000
Inversion Chr10 4934070 5838816 OsKitaake10g036000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29369413	A-T	Homo	INTERGENIC
SBS	Chr2	6031841	C-A	Hetero	INTERGENIC
SBS	Chr2	6031842	G-A	Hetero	INTERGENIC
SBS	Chr2	11668268	C-G	Hetero	INTERGENIC
SBS	Chr2	14921990	C-A	Hetero	INTERGENIC
SBS	Chr2	15824946	C-T	Hetero	INTERGENIC
SBS	Chr2	35269036	A-T	Hetero	INTERGENIC
SBS	Chr3	4266725	T-A	Hetero	INTRON
SBS	Chr3	4266726	T-A	Hetero	INTRON
SBS	Chr3	4266838	A-G	Hetero	INTRON
SBS	Chr3	4296797	C-T	Hetero	INTERGENIC
SBS	Chr3	15860326	G-A	Hetero	INTERGENIC
SBS	Chr3	18367685	A-G	Hetero	INTERGENIC
SBS	Chr4	1538502	C-T	Hetero	INTERGENIC
SBS	Chr4	5876940	T-C	Hetero	INTERGENIC
SBS	Chr4	6204168	A-C	Homo	INTERGENIC
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr4	16558443	C-T	Hetero	INTERGENIC
SBS	Chr4	30366549	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	30854569	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g239200
SBS	Chr6	5560696	T-C	Hetero	INTRON
SBS	Chr6	10235688	A-T	Hetero	INTRON
SBS	Chr6	10235689	A-T	Hetero	INTRON
SBS	Chr7	4042771	C-T	Hetero	INTERGENIC
SBS	Chr7	13625688	C-T	Hetero	INTERGENIC
SBS	Chr7	14396634	C-T	Homo	INTERGENIC
SBS	Chr7	22018913	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g185200
SBS	Chr8	17025031	C-T	Hetero	INTERGENIC
SBS	Chr8	20632251	A-T	Hetero	INTRON
SBS	Chr9	1641032	G-A	Hetero	INTERGENIC
SBS	Chr9	3891139	C-T	Hetero	INTERGENIC
SBS	Chr9	6102234	G-A	Homo	INTERGENIC
SBS	Chr9	6360806	G-C	Hetero	INTERGENIC
SBS	Chr9	14076949	G-C	Hetero	INTERGENIC
SBS	Chr9	16599610	G-A	Hetero	INTERGENIC
SBS	Chr10	4691523	C-T	Hetero	INTERGENIC
SBS	Chr11	1704714	C-T	Hetero	INTERGENIC
SBS	Chr11	12384631	C-A	Hetero	INTERGENIC
SBS	Chr12	6761219	A-C	Hetero	INTERGENIC
SBS	Chr12	8493162	G-T	Homo	INTERGENIC
SBS	Chr12	16255275	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	19051634	G-T	Homo	INTERGENIC
SBS	Chr12	25215319	T-C	Hetero	INTRON
SBS	Chr12	26978260	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	641584	641588	4
Deletion	Chr2	4278526	4278532	6
Deletion	Chr11	5171792	5171795	3
Deletion	Chr5	5603128	5603133	5
Deletion	Chr10	5691001	5843000	151999	8
Deletion	Chr6	6289662	6289669	7
Deletion	Chr9	8087929	8087935	6
Deletion	Chr5	8510115	8510135	20
Deletion	Chr7	9872426	9872430	4
Deletion	Chr12	11369624	11369634	10
Deletion	Chr10	11838133	11838134	1
Deletion	Chr7	11947275	11947289	14
Deletion	Chr11	13294538	13294542	4
Deletion	Chr11	13997001	14048000	50999	2
Deletion	Chr6	14538323	14538324	1
Deletion	Chr2	14747241	14747243	2
Deletion	Chr2	15900609	15900617	8
Deletion	Chr12	17251066	17251070	4
Deletion	Chr5	18297977	18297990	13
Deletion	Chr3	19720173	19720183	10
Deletion	Chr7	20979025	20979026	1
Deletion	Chr7	23720430	23720435	5
Deletion	Chr5	24474211	24474217	6
Deletion	Chr1	24764154	24764158	4
Deletion	Chr4	24860068	24860072	4
Deletion	Chr4	24936754	24936755	1
Deletion	Chr4	26085771	26085772	1
Deletion	Chr12	26385175	26385176	1
Deletion	Chr5	27684170	27684172	2
Deletion	Chr2	29836579	29836586	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4864711	4934064	OsKitaake10g036000
Inversion	Chr10	4934070	5838816	OsKitaake10g036000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes