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| Mutant Information |
|---|
| Mutant Name | FN-168 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-168 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1523198 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 8712277 | A-C | Hetero | INTRON | |
| SBS | Chr1 | 10945787 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 14975473 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 15846095 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 16682260 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g177400 |
| SBS | Chr1 | 41971321 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g460032 |
| SBS | Chr1 | 43133953 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 9357180 | G-A | Homo | INTRON | |
| SBS | Chr3 | 6961727 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 10577924 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2442513 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g015100 |
| SBS | Chr5 | 12384094 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 13124852 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19792942 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 4890069 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23800958 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 697415 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 8449495 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 13786278 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 14457805 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 15685313 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 21595825 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 23885777 | A-T | Homo | INTRON | |
| SBS | Chr9 | 9257898 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 189838 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10107949 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18067168 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 21812288 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 14272238 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 17174757 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17461999 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 28773228 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 487071 | G-A | Homo | START_GAINED | |
| SBS | Chr12 | 1831261 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 12105586 | T-C | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 1714718 | 1714720 | 2 | |
| Deletion | Chr9 | 3123840 | 3123842 | 2 | |
| Deletion | Chr6 | 4936932 | 4937057 | 125 | |
| Deletion | Chr11 | 10220065 | 10220066 | 1 | |
| Deletion | Chr3 | 12002593 | 12002724 | 131 | OsKitaake03g163200 |
| Deletion | Chr12 | 12415232 | 12415233 | 1 | |
| Deletion | Chr10 | 15559767 | 15559768 | 1 | |
| Deletion | Chr12 | 19311780 | 19311865 | 85 | |
| Deletion | Chr4 | 23594248 | 23594249 | 1 | |
| Deletion | Chr8 | 24809011 | 24809014 | 3 | |
| Deletion | Chr5 | 27309001 | 27372000 | 62999 | 9 |
| Deletion | Chr1 | 38720337 | 38720338 | 1 | OsKitaake01g414100 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 3939810 | 3939813 | 2 | |
| Insertion | Chr2 | 35354679 | 35354681 | 1 |