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Mutant Information

Mutant Name	FN-169 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-169 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1214949 T-C Hetero INTERGENIC
SBS Chr1 3047282 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g038300
SBS Chr1 10274119 A-G Hetero INTERGENIC
SBS Chr1 15813946 T-G Hetero INTRON
SBS Chr1 19564346 C-T Hetero INTERGENIC
SBS Chr1 30684413 C-A Hetero INTERGENIC
SBS Chr1 34912672 G-T Homo INTERGENIC
SBS Chr2 7253084 A-T Homo INTERGENIC
SBS Chr2 9758191 T-G Homo INTERGENIC
SBS Chr2 15064564 C-G Hetero INTERGENIC
SBS Chr3 10830692 C-T Hetero INTERGENIC
SBS Chr3 19354477 C-G Hetero INTERGENIC
SBS Chr3 20768448 T-C Hetero INTERGENIC
SBS Chr3 30601882 A-T Homo INTERGENIC
SBS Chr3 35818350 G-A Hetero UTR_5_PRIME
SBS Chr3 36324317 A-G Hetero INTERGENIC
SBS Chr4 6646908 A-C Hetero INTERGENIC
SBS Chr4 17678204 T-C Hetero INTRON
SBS Chr4 20631480 C-T Hetero INTRON
SBS Chr4 33344013 C-A Homo INTERGENIC
SBS Chr5 6466338 A-C Hetero INTERGENIC
SBS Chr5 23160054 C-T Hetero INTERGENIC
SBS Chr5 28570197 G-T Hetero INTERGENIC
SBS Chr6 1941926 A-G Hetero INTRON
SBS Chr6 5047501 C-T Hetero INTRON
SBS Chr6 5636092 C-A Hetero INTERGENIC
SBS Chr6 19907790 C-T Hetero INTERGENIC
SBS Chr6 24525850 G-A Hetero INTERGENIC
SBS Chr6 27443126 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g247800
SBS Chr7 849476 A-T Homo INTERGENIC
SBS Chr7 2712654 A-G Hetero INTRON
SBS Chr7 11182668 G-A Hetero INTERGENIC
SBS Chr8 16012431 C-T Hetero INTERGENIC
SBS Chr8 19803883 G-C Hetero UTR_3_PRIME
SBS Chr8 20843959 A-G Hetero INTERGENIC
SBS Chr8 29197016 A-T Hetero INTERGENIC
SBS Chr9 13545769 C-T Hetero INTERGENIC
SBS Chr10 1173373 C-A Hetero INTERGENIC
SBS Chr10 1282354 G-T Hetero INTERGENIC
SBS Chr10 3740948 C-T Hetero INTERGENIC
SBS Chr10 18582392 C-T Hetero INTERGENIC
SBS Chr10 21156963 T-A Hetero INTERGENIC
SBS Chr10 21542264 C-A Hetero INTERGENIC
SBS Chr11 5202519 C-T Homo INTERGENIC
SBS Chr11 7474278 T-G Homo INTRON
SBS Chr12 26393033 C-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 8381157 8381158 1
Deletion Chr9 8531375 8531379 4
Deletion Chr4 10610055 10610056 1
Deletion Chr7 13760001 13795000 34999 OsKitaake07g120300
Deletion Chr6 14331090 14331268 178
Deletion Chr5 14780538 14780542 4
Deletion Chr9 16941892 16941894 2
Deletion Chr2 17339527 17339635 108 OsKitaake02g174100
Deletion Chr7 17842904 17842905 1
Deletion Chr2 20187929 20187930 1 OsKitaake02g196900
Deletion Chr5 21299299 21299300 1
Deletion Chr12 21749983 21749984 1
Deletion Chr1 22096588 22096590 2
Deletion Chr3 22748120 22748123 3
Deletion Chr5 23377359 23377361 2
Deletion Chr2 23432740 23432808 68
Deletion Chr4 35313283 35313293 10
Deletion Chr1 41959848 41959849 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 19668113 19668116 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 24755547 25059526
Inversion Chr3 24755550 24875946

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 3330413 Chr2 33114687 2
Translocation Chr7 3330448 Chr2 32982932 2
Translocation Chr10 5858125 Chr6 12175656

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1214949	T-C	Hetero	INTERGENIC
SBS	Chr1	3047282	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g038300
SBS	Chr1	10274119	A-G	Hetero	INTERGENIC
SBS	Chr1	15813946	T-G	Hetero	INTRON
SBS	Chr1	19564346	C-T	Hetero	INTERGENIC
SBS	Chr1	30684413	C-A	Hetero	INTERGENIC
SBS	Chr1	34912672	G-T	Homo	INTERGENIC
SBS	Chr2	7253084	A-T	Homo	INTERGENIC
SBS	Chr2	9758191	T-G	Homo	INTERGENIC
SBS	Chr2	15064564	C-G	Hetero	INTERGENIC
SBS	Chr3	10830692	C-T	Hetero	INTERGENIC
SBS	Chr3	19354477	C-G	Hetero	INTERGENIC
SBS	Chr3	20768448	T-C	Hetero	INTERGENIC
SBS	Chr3	30601882	A-T	Homo	INTERGENIC
SBS	Chr3	35818350	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	36324317	A-G	Hetero	INTERGENIC
SBS	Chr4	6646908	A-C	Hetero	INTERGENIC
SBS	Chr4	17678204	T-C	Hetero	INTRON
SBS	Chr4	20631480	C-T	Hetero	INTRON
SBS	Chr4	33344013	C-A	Homo	INTERGENIC
SBS	Chr5	6466338	A-C	Hetero	INTERGENIC
SBS	Chr5	23160054	C-T	Hetero	INTERGENIC
SBS	Chr5	28570197	G-T	Hetero	INTERGENIC
SBS	Chr6	1941926	A-G	Hetero	INTRON
SBS	Chr6	5047501	C-T	Hetero	INTRON
SBS	Chr6	5636092	C-A	Hetero	INTERGENIC
SBS	Chr6	19907790	C-T	Hetero	INTERGENIC
SBS	Chr6	24525850	G-A	Hetero	INTERGENIC
SBS	Chr6	27443126	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g247800
SBS	Chr7	849476	A-T	Homo	INTERGENIC
SBS	Chr7	2712654	A-G	Hetero	INTRON
SBS	Chr7	11182668	G-A	Hetero	INTERGENIC
SBS	Chr8	16012431	C-T	Hetero	INTERGENIC
SBS	Chr8	19803883	G-C	Hetero	UTR_3_PRIME
SBS	Chr8	20843959	A-G	Hetero	INTERGENIC
SBS	Chr8	29197016	A-T	Hetero	INTERGENIC
SBS	Chr9	13545769	C-T	Hetero	INTERGENIC
SBS	Chr10	1173373	C-A	Hetero	INTERGENIC
SBS	Chr10	1282354	G-T	Hetero	INTERGENIC
SBS	Chr10	3740948	C-T	Hetero	INTERGENIC
SBS	Chr10	18582392	C-T	Hetero	INTERGENIC
SBS	Chr10	21156963	T-A	Hetero	INTERGENIC
SBS	Chr10	21542264	C-A	Hetero	INTERGENIC
SBS	Chr11	5202519	C-T	Homo	INTERGENIC
SBS	Chr11	7474278	T-G	Homo	INTRON
SBS	Chr12	26393033	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	8381157	8381158	1
Deletion	Chr9	8531375	8531379	4
Deletion	Chr4	10610055	10610056	1
Deletion	Chr7	13760001	13795000	34999	OsKitaake07g120300
Deletion	Chr6	14331090	14331268	178
Deletion	Chr5	14780538	14780542	4
Deletion	Chr9	16941892	16941894	2
Deletion	Chr2	17339527	17339635	108	OsKitaake02g174100
Deletion	Chr7	17842904	17842905	1
Deletion	Chr2	20187929	20187930	1	OsKitaake02g196900
Deletion	Chr5	21299299	21299300	1
Deletion	Chr12	21749983	21749984	1
Deletion	Chr1	22096588	22096590	2
Deletion	Chr3	22748120	22748123	3
Deletion	Chr5	23377359	23377361	2
Deletion	Chr2	23432740	23432808	68
Deletion	Chr4	35313283	35313293	10
Deletion	Chr1	41959848	41959849	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	24755547	25059526
Inversion	Chr3	24755550	24875946

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes