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Mutant Information

Mutant Name	FN-17 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-17 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 14

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9353991 G-A Homo INTRON
SBS Chr1 31505537 T-C Hetero INTERGENIC
SBS Chr2 3801625 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g055050
SBS Chr2 21127086 T-G Hetero INTERGENIC
SBS Chr3 35389753 G-A Homo INTERGENIC
SBS Chr4 34183937 C-A Homo INTERGENIC
SBS Chr5 21416167 T-C Hetero INTERGENIC
SBS Chr6 22801143 T-C Homo INTERGENIC
SBS Chr7 21161464 T-C Hetero INTERGENIC
SBS Chr8 4860100 A-T Hetero INTERGENIC
SBS Chr10 10655577 G-A Hetero INTERGENIC
SBS Chr11 18170017 C-T Hetero INTRON
SBS Chr11 19198323 T-G Hetero INTERGENIC
SBS Chr12 17699753 T-C Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1594902 1594904 2
Deletion Chr5 1697620 1697622 2
Deletion Chr5 3097093 3097106 13
Deletion Chr10 3914749 3914753 4
Deletion Chr1 4267733 4267735 2
Deletion Chr6 5698794 5698796 2
Deletion Chr12 6428001 6485000 56999 7
Deletion Chr7 6951736 6951743 7
Deletion Chr10 7007816 7007831 15
Deletion Chr10 8671195 8671360 165
Deletion Chr10 8673574 8673740 166
Deletion Chr6 9539974 9539975 1
Deletion Chr9 10703959 10703967 8
Deletion Chr3 10743646 10743647 1
Deletion Chr4 12624271 12624457 186
Deletion Chr9 13669344 13669346 2
Deletion Chr9 15347977 15347981 4
Deletion Chr3 16554366 16554386 20
Deletion Chr5 16743591 16743682 91
Deletion Chr3 17361042 17361124 82
Deletion Chr1 22240080 22240103 23
Deletion Chr11 25350623 25350635 12
Deletion Chr4 26151787 26151789 2
Deletion Chr4 26918001 26951000 32999 2
Deletion Chr11 29255869 29255873 4
Deletion Chr3 30492489 30492502 13
Deletion Chr2 34340460 34340461 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16222217 16222227 9
Insertion Chr7 16914611 16914614 2
Insertion Chr5 21767326 21767332 5

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14686639 15491124
Inversion Chr12 24046377 24191534 OsKitaake12g194700
Inversion Chr12 24046383 24191915 OsKitaake12g194700
Inversion Chr4 32183999 32979446 OsKitaake04g267100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9353991	G-A	Homo	INTRON
SBS	Chr1	31505537	T-C	Hetero	INTERGENIC
SBS	Chr2	3801625	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g055050
SBS	Chr2	21127086	T-G	Hetero	INTERGENIC
SBS	Chr3	35389753	G-A	Homo	INTERGENIC
SBS	Chr4	34183937	C-A	Homo	INTERGENIC
SBS	Chr5	21416167	T-C	Hetero	INTERGENIC
SBS	Chr6	22801143	T-C	Homo	INTERGENIC
SBS	Chr7	21161464	T-C	Hetero	INTERGENIC
SBS	Chr8	4860100	A-T	Hetero	INTERGENIC
SBS	Chr10	10655577	G-A	Hetero	INTERGENIC
SBS	Chr11	18170017	C-T	Hetero	INTRON
SBS	Chr11	19198323	T-G	Hetero	INTERGENIC
SBS	Chr12	17699753	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1594902	1594904	2
Deletion	Chr5	1697620	1697622	2
Deletion	Chr5	3097093	3097106	13
Deletion	Chr10	3914749	3914753	4
Deletion	Chr1	4267733	4267735	2
Deletion	Chr6	5698794	5698796	2
Deletion	Chr12	6428001	6485000	56999	7
Deletion	Chr7	6951736	6951743	7
Deletion	Chr10	7007816	7007831	15
Deletion	Chr10	8671195	8671360	165
Deletion	Chr10	8673574	8673740	166
Deletion	Chr6	9539974	9539975	1
Deletion	Chr9	10703959	10703967	8
Deletion	Chr3	10743646	10743647	1
Deletion	Chr4	12624271	12624457	186
Deletion	Chr9	13669344	13669346	2
Deletion	Chr9	15347977	15347981	4
Deletion	Chr3	16554366	16554386	20
Deletion	Chr5	16743591	16743682	91
Deletion	Chr3	17361042	17361124	82
Deletion	Chr1	22240080	22240103	23
Deletion	Chr11	25350623	25350635	12
Deletion	Chr4	26151787	26151789	2
Deletion	Chr4	26918001	26951000	32999	2
Deletion	Chr11	29255869	29255873	4
Deletion	Chr3	30492489	30492502	13
Deletion	Chr2	34340460	34340461	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14686639	15491124
Inversion	Chr12	24046377	24191534	OsKitaake12g194700
Inversion	Chr12	24046383	24191915	OsKitaake12g194700
Inversion	Chr4	32183999	32979446	OsKitaake04g267100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes