Search Kitaake

Mutant Information

Mutant Name	FN-170 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-170 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8570239 A-G Hetero INTERGENIC
SBS Chr1 11273631 A-T Hetero INTERGENIC
SBS Chr1 12108209 G-A Hetero INTERGENIC
SBS Chr1 13738926 T-G Homo SYNONYMOUS_CODING
SBS Chr1 17419515 C-T Homo INTERGENIC
SBS Chr1 17630907 A-T Homo INTRON
SBS Chr1 17630915 A-C Homo INTRON
SBS Chr1 31626958 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g317800
SBS Chr1 31626959 A-T Hetero SYNONYMOUS_CODING
SBS Chr1 36985901 A-C Hetero INTERGENIC
SBS Chr1 41654707 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g455200
SBS Chr1 41654711 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 16802647 T-G Hetero INTERGENIC
SBS Chr2 26406251 A-C Homo INTERGENIC
SBS Chr2 26526850 G-T Homo NON_SYNONYMOUS_CODING OsKitaake02g265100
SBS Chr3 4556395 A-G Hetero INTRON
SBS Chr3 13144597 A-G Hetero INTERGENIC
SBS Chr3 14930888 T-C Hetero INTERGENIC
SBS Chr3 23791540 G-A Hetero INTERGENIC
SBS Chr3 31604460 G-A Homo INTERGENIC
SBS Chr4 16952934 G-A Hetero INTERGENIC
SBS Chr4 17526705 T-A Homo INTRON
SBS Chr4 26482174 G-A Hetero INTERGENIC
SBS Chr4 26861448 C-G Hetero UTR_3_PRIME
SBS Chr4 29952643 C-T Hetero INTERGENIC
SBS Chr4 33242294 C-G Hetero INTERGENIC
SBS Chr4 34486451 T-C Hetero INTERGENIC
SBS Chr5 13911517 C-A Hetero INTERGENIC
SBS Chr6 4015106 T-C Hetero INTERGENIC
SBS Chr7 3583292 A-G Hetero INTRON
SBS Chr7 4233536 T-C Hetero INTERGENIC
SBS Chr8 4473186 C-A Hetero INTERGENIC
SBS Chr8 11415636 G-A Hetero INTERGENIC
SBS Chr8 11538260 G-A Homo INTERGENIC
SBS Chr8 13040375 C-T Hetero INTERGENIC
SBS Chr8 14724932 C-T Homo INTERGENIC
SBS Chr8 14724933 T-C Homo INTERGENIC
SBS Chr8 14724934 C-T Homo INTERGENIC
SBS Chr8 21579721 T-C Hetero UTR_3_PRIME
SBS Chr8 22865541 T-G Hetero INTERGENIC
SBS Chr8 28759586 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g247100
SBS Chr9 1989671 G-C Hetero INTERGENIC
SBS Chr9 13518413 G-A Homo INTERGENIC
SBS Chr9 20372711 C-T Hetero INTERGENIC
SBS Chr9 21045167 A-G Hetero INTERGENIC
SBS Chr10 19619576 C-T Hetero INTERGENIC
SBS Chr10 19619578 A-T Hetero INTERGENIC
SBS Chr11 8660896 T-C Hetero INTERGENIC
SBS Chr11 11960885 G-A Hetero INTERGENIC
SBS Chr11 12982770 A-G Hetero INTERGENIC
SBS Chr12 2779458 T-A Homo NON_SYNONYMOUS_CODING OsKitaake12g041400
SBS Chr12 2779459 G-A Homo SYNONYMOUS_CODING
SBS Chr12 2779460 A-T Homo NON_SYNONYMOUS_CODING OsKitaake12g041400
SBS Chr12 2779587 A-C Homo NON_SYNONYMOUS_CODING OsKitaake12g041400
SBS Chr12 14624582 T-C Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 5711842 5711843 1
Deletion Chr6 5851792 5851802 10
Deletion Chr5 8277417 8277421 4
Deletion Chr4 9589158 9589159 1
Deletion Chr8 15463574 15463577 3
Deletion Chr10 15762366 15762454 88
Deletion Chr9 16040324 16040325 1 OsKitaake09g114800
Deletion Chr1 19554773 19554774 1
Deletion Chr4 19717624 19717642 18
Deletion Chr1 20044393 20044412 19
Deletion Chr3 23539844 23539849 5
Deletion Chr7 25833601 25833604 3
Deletion Chr11 25883089 25883091 2 OsKitaake11g208100
Deletion Chr2 26406192 26406194 2
Deletion Chr12 26420574 26420584 10
Deletion Chr5 28270322 28270328 6
Deletion Chr6 28447551 28447553 2
Deletion Chr3 31334635 31334637 2
Deletion Chr4 31976380 31976387 7
Deletion Chr1 37108053 37108057 4
Deletion Chr1 42074001 42300000 225999 49

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 13448796 13448799 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 1083061 1833993 OsKitaake12g027900
Inversion Chr12 1577064 1833990 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 15497181 Chr1 38438607
Translocation Chr12 15497432 Chr1 38438605
Translocation Chr12 15542127 Chr7 24232885 OsKitaake07g215600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8570239	A-G	Hetero	INTERGENIC
SBS	Chr1	11273631	A-T	Hetero	INTERGENIC
SBS	Chr1	12108209	G-A	Hetero	INTERGENIC
SBS	Chr1	13738926	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	17419515	C-T	Homo	INTERGENIC
SBS	Chr1	17630907	A-T	Homo	INTRON
SBS	Chr1	17630915	A-C	Homo	INTRON
SBS	Chr1	31626958	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g317800
SBS	Chr1	31626959	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	36985901	A-C	Hetero	INTERGENIC
SBS	Chr1	41654707	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g455200
SBS	Chr1	41654711	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	16802647	T-G	Hetero	INTERGENIC
SBS	Chr2	26406251	A-C	Homo	INTERGENIC
SBS	Chr2	26526850	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g265100
SBS	Chr3	4556395	A-G	Hetero	INTRON
SBS	Chr3	13144597	A-G	Hetero	INTERGENIC
SBS	Chr3	14930888	T-C	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Hetero	INTERGENIC
SBS	Chr3	31604460	G-A	Homo	INTERGENIC
SBS	Chr4	16952934	G-A	Hetero	INTERGENIC
SBS	Chr4	17526705	T-A	Homo	INTRON
SBS	Chr4	26482174	G-A	Hetero	INTERGENIC
SBS	Chr4	26861448	C-G	Hetero	UTR_3_PRIME
SBS	Chr4	29952643	C-T	Hetero	INTERGENIC
SBS	Chr4	33242294	C-G	Hetero	INTERGENIC
SBS	Chr4	34486451	T-C	Hetero	INTERGENIC
SBS	Chr5	13911517	C-A	Hetero	INTERGENIC
SBS	Chr6	4015106	T-C	Hetero	INTERGENIC
SBS	Chr7	3583292	A-G	Hetero	INTRON
SBS	Chr7	4233536	T-C	Hetero	INTERGENIC
SBS	Chr8	4473186	C-A	Hetero	INTERGENIC
SBS	Chr8	11415636	G-A	Hetero	INTERGENIC
SBS	Chr8	11538260	G-A	Homo	INTERGENIC
SBS	Chr8	13040375	C-T	Hetero	INTERGENIC
SBS	Chr8	14724932	C-T	Homo	INTERGENIC
SBS	Chr8	14724933	T-C	Homo	INTERGENIC
SBS	Chr8	14724934	C-T	Homo	INTERGENIC
SBS	Chr8	21579721	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	22865541	T-G	Hetero	INTERGENIC
SBS	Chr8	28759586	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g247100
SBS	Chr9	1989671	G-C	Hetero	INTERGENIC
SBS	Chr9	13518413	G-A	Homo	INTERGENIC
SBS	Chr9	20372711	C-T	Hetero	INTERGENIC
SBS	Chr9	21045167	A-G	Hetero	INTERGENIC
SBS	Chr10	19619576	C-T	Hetero	INTERGENIC
SBS	Chr10	19619578	A-T	Hetero	INTERGENIC
SBS	Chr11	8660896	T-C	Hetero	INTERGENIC
SBS	Chr11	11960885	G-A	Hetero	INTERGENIC
SBS	Chr11	12982770	A-G	Hetero	INTERGENIC
SBS	Chr12	2779458	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g041400
SBS	Chr12	2779459	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr12	2779460	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g041400
SBS	Chr12	2779587	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g041400
SBS	Chr12	14624582	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	5711842	5711843	1
Deletion	Chr6	5851792	5851802	10
Deletion	Chr5	8277417	8277421	4
Deletion	Chr4	9589158	9589159	1
Deletion	Chr8	15463574	15463577	3
Deletion	Chr10	15762366	15762454	88
Deletion	Chr9	16040324	16040325	1	OsKitaake09g114800
Deletion	Chr1	19554773	19554774	1
Deletion	Chr4	19717624	19717642	18
Deletion	Chr1	20044393	20044412	19
Deletion	Chr3	23539844	23539849	5
Deletion	Chr7	25833601	25833604	3
Deletion	Chr11	25883089	25883091	2	OsKitaake11g208100
Deletion	Chr2	26406192	26406194	2
Deletion	Chr12	26420574	26420584	10
Deletion	Chr5	28270322	28270328	6
Deletion	Chr6	28447551	28447553	2
Deletion	Chr3	31334635	31334637	2
Deletion	Chr4	31976380	31976387	7
Deletion	Chr1	37108053	37108057	4
Deletion	Chr1	42074001	42300000	225999	49

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1083061	1833993	OsKitaake12g027900
Inversion	Chr12	1577064	1833990	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes