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Mutant Information

Mutant Name	FN-171 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-171 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7355767 G-A Hetero INTERGENIC
SBS Chr1 27809719 A-G Homo INTERGENIC
SBS Chr1 40022751 T-C Hetero INTERGENIC
SBS Chr2 3704258 T-C Hetero INTRON
SBS Chr2 18253115 A-C Hetero INTERGENIC
SBS Chr2 32785235 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 34340650 C-G Hetero INTERGENIC
SBS Chr3 15288348 G-C Hetero INTERGENIC
SBS Chr3 15288349 G-T Hetero INTERGENIC
SBS Chr3 27485708 G-A Hetero INTRON
SBS Chr3 28215374 T-C Hetero INTRON
SBS Chr5 11868202 C-T Homo INTERGENIC
SBS Chr5 29774198 G-T Homo INTRON
SBS Chr6 3038501 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g041900
SBS Chr6 9244437 T-C Hetero INTERGENIC
SBS Chr6 19285059 A-G Homo INTERGENIC
SBS Chr7 7495492 C-T Hetero INTERGENIC
SBS Chr7 8216973 C-A Homo INTERGENIC
SBS Chr7 11548496 C-T Hetero INTERGENIC
SBS Chr7 11907397 T-C Homo INTERGENIC
SBS Chr7 14843254 T-G Homo INTRON
SBS Chr7 18369416 G-C Homo INTERGENIC
SBS Chr8 299999 A-T Homo NON_SYNONYMOUS_CODING OsKitaake08g004200
SBS Chr8 591179 G-A Hetero INTERGENIC
SBS Chr8 9836376 T-A Homo INTERGENIC
SBS Chr8 22309939 T-G Hetero INTERGENIC
SBS Chr9 370504 G-T Homo INTERGENIC
SBS Chr10 9274428 A-G Homo INTERGENIC
SBS Chr10 12086373 C-T Homo INTERGENIC
SBS Chr10 13984794 C-T Hetero INTERGENIC
SBS Chr11 20177927 G-C Homo INTERGENIC
SBS Chr12 5734232 A-G Hetero INTRON
SBS Chr12 9041173 C-T Hetero INTERGENIC
SBS Chr12 12077800 T-A Hetero INTERGENIC
SBS Chr12 12261297 C-T Hetero INTERGENIC
SBS Chr12 14238272 A-G Hetero INTERGENIC
SBS Chr12 16991868 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 107143 107144 1
Deletion Chr4 7040885 7040886 1
Deletion Chr1 7318001 7348000 29999 2
Deletion Chr9 15764001 15795000 30999 6
Deletion Chr11 16340834 16340836 2
Deletion Chr6 25300091 25300092 1
Deletion Chr3 25941480 25941481 1
Deletion Chr3 29170445 29170446 1
Deletion Chr5 29461455 29461457 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 14428625 14428628 2
Insertion Chr6 13003201 13003204 2
Insertion Chr5 30012537 30012539 1
Insertion Chr8 7323137 7323139 1
Insertion Chr11 9365092 9365095 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 7343546 7551657 2
Inversion Chr1 7360334 7549739 OsKitaake01g094600
Inversion Chr1 7360347 7555976 OsKitaake01g094700
Inversion Chr1 7868386 8253033 2
Inversion Chr12 10732474 10966975 OsKitaake12g101500
Inversion Chr12 10774104 10967021 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10732553 Chr2 11441733
Translocation Chr12 10774100 Chr2 11441738 OsKitaake12g100100
Translocation Chr11 24795783 Chr4 36264046 2
Translocation Chr11 24795785 Chr4 36261279 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7355767	G-A	Hetero	INTERGENIC
SBS	Chr1	27809719	A-G	Homo	INTERGENIC
SBS	Chr1	40022751	T-C	Hetero	INTERGENIC
SBS	Chr2	3704258	T-C	Hetero	INTRON
SBS	Chr2	18253115	A-C	Hetero	INTERGENIC
SBS	Chr2	32785235	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	34340650	C-G	Hetero	INTERGENIC
SBS	Chr3	15288348	G-C	Hetero	INTERGENIC
SBS	Chr3	15288349	G-T	Hetero	INTERGENIC
SBS	Chr3	27485708	G-A	Hetero	INTRON
SBS	Chr3	28215374	T-C	Hetero	INTRON
SBS	Chr5	11868202	C-T	Homo	INTERGENIC
SBS	Chr5	29774198	G-T	Homo	INTRON
SBS	Chr6	3038501	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g041900
SBS	Chr6	9244437	T-C	Hetero	INTERGENIC
SBS	Chr6	19285059	A-G	Homo	INTERGENIC
SBS	Chr7	7495492	C-T	Hetero	INTERGENIC
SBS	Chr7	8216973	C-A	Homo	INTERGENIC
SBS	Chr7	11548496	C-T	Hetero	INTERGENIC
SBS	Chr7	11907397	T-C	Homo	INTERGENIC
SBS	Chr7	14843254	T-G	Homo	INTRON
SBS	Chr7	18369416	G-C	Homo	INTERGENIC
SBS	Chr8	299999	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g004200
SBS	Chr8	591179	G-A	Hetero	INTERGENIC
SBS	Chr8	9836376	T-A	Homo	INTERGENIC
SBS	Chr8	22309939	T-G	Hetero	INTERGENIC
SBS	Chr9	370504	G-T	Homo	INTERGENIC
SBS	Chr10	9274428	A-G	Homo	INTERGENIC
SBS	Chr10	12086373	C-T	Homo	INTERGENIC
SBS	Chr10	13984794	C-T	Hetero	INTERGENIC
SBS	Chr11	20177927	G-C	Homo	INTERGENIC
SBS	Chr12	5734232	A-G	Hetero	INTRON
SBS	Chr12	9041173	C-T	Hetero	INTERGENIC
SBS	Chr12	12077800	T-A	Hetero	INTERGENIC
SBS	Chr12	12261297	C-T	Hetero	INTERGENIC
SBS	Chr12	14238272	A-G	Hetero	INTERGENIC
SBS	Chr12	16991868	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	107143	107144	1
Deletion	Chr4	7040885	7040886	1
Deletion	Chr1	7318001	7348000	29999	2
Deletion	Chr9	15764001	15795000	30999	6
Deletion	Chr11	16340834	16340836	2
Deletion	Chr6	25300091	25300092	1
Deletion	Chr3	25941480	25941481	1
Deletion	Chr3	29170445	29170446	1
Deletion	Chr5	29461455	29461457	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7343546	7551657	2
Inversion	Chr1	7360334	7549739	OsKitaake01g094600
Inversion	Chr1	7360347	7555976	OsKitaake01g094700
Inversion	Chr1	7868386	8253033	2
Inversion	Chr12	10732474	10966975	OsKitaake12g101500
Inversion	Chr12	10774104	10967021	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes