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Mutant Information

Mutant Name	FN-172 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-172 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8947672 G-A Hetero INTERGENIC
SBS Chr1 8947673 A-T Hetero INTERGENIC
SBS Chr1 14119665 A-G Hetero INTERGENIC
SBS Chr1 22020579 C-T Homo INTERGENIC
SBS Chr1 22192540 C-A Hetero INTERGENIC
SBS Chr1 35478968 G-A Homo INTERGENIC
SBS Chr2 24448063 C-G Hetero INTERGENIC
SBS Chr3 35693058 G-A Homo INTERGENIC
SBS Chr4 5889022 C-A Hetero INTERGENIC
SBS Chr4 5889023 C-T Hetero INTERGENIC
SBS Chr4 24237065 A-T Hetero INTERGENIC
SBS Chr4 30658151 T-A Hetero INTERGENIC
SBS Chr5 11967094 C-G Hetero INTERGENIC
SBS Chr6 12925039 C-T Hetero INTERGENIC
SBS Chr6 17598868 T-A Hetero INTERGENIC
SBS Chr6 18067073 T-A Hetero INTERGENIC
SBS Chr6 27664534 T-C Hetero INTERGENIC
SBS Chr7 8349770 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 10845159 T-G Hetero INTERGENIC
SBS Chr7 18645247 T-C Hetero INTERGENIC
SBS Chr7 26882618 T-A Hetero INTERGENIC
SBS Chr8 7103866 T-C Hetero INTERGENIC
SBS Chr8 9171242 A-G Hetero INTERGENIC
SBS Chr8 9719305 A-G Hetero INTERGENIC
SBS Chr8 15546976 G-C Hetero INTERGENIC
SBS Chr8 24566406 G-A Hetero INTERGENIC
SBS Chr9 10783744 A-T Hetero INTRON
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr10 17371895 C-A Hetero INTERGENIC
SBS Chr10 22004090 T-C Hetero INTERGENIC
SBS Chr11 21037265 C-T Hetero INTERGENIC
SBS Chr11 21037266 G-T Hetero INTERGENIC
SBS Chr12 8085042 A-G Homo INTERGENIC
SBS Chr12 13122321 C-T Homo INTERGENIC
SBS Chr12 15334474 A-G Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 334324 334325 1
Deletion Chr4 781890 781893 3
Deletion Chr3 1334163 1334182 19
Deletion Chr4 1728208 1728215 7
Deletion Chr9 2696713 2696714 1
Deletion Chr6 7393027 7393028 1
Deletion Chr2 7846412 7846420 8
Deletion Chr4 11608637 11608638 1
Deletion Chr10 13363054 13363070 16
Deletion Chr4 17076999 17077007 8
Deletion Chr12 19210177 19210179 2
Deletion Chr10 19224937 19224938 1
Deletion Chr3 21515854 21515866 12
Deletion Chr5 27046206 27046214 8
Deletion Chr4 29639772 29639777 5
Deletion Chr1 33045395 33045412 17
Deletion Chr4 35187175 35187176 1
Deletion Chr1 35923327 35923328 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 13076340 13076342 1
Insertion Chr6 17568671 17568673 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 26863469 26934739
Inversion Chr11 26863479 26934754

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8947672	G-A	Hetero	INTERGENIC
SBS	Chr1	8947673	A-T	Hetero	INTERGENIC
SBS	Chr1	14119665	A-G	Hetero	INTERGENIC
SBS	Chr1	22020579	C-T	Homo	INTERGENIC
SBS	Chr1	22192540	C-A	Hetero	INTERGENIC
SBS	Chr1	35478968	G-A	Homo	INTERGENIC
SBS	Chr2	24448063	C-G	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Homo	INTERGENIC
SBS	Chr4	5889022	C-A	Hetero	INTERGENIC
SBS	Chr4	5889023	C-T	Hetero	INTERGENIC
SBS	Chr4	24237065	A-T	Hetero	INTERGENIC
SBS	Chr4	30658151	T-A	Hetero	INTERGENIC
SBS	Chr5	11967094	C-G	Hetero	INTERGENIC
SBS	Chr6	12925039	C-T	Hetero	INTERGENIC
SBS	Chr6	17598868	T-A	Hetero	INTERGENIC
SBS	Chr6	18067073	T-A	Hetero	INTERGENIC
SBS	Chr6	27664534	T-C	Hetero	INTERGENIC
SBS	Chr7	8349770	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	10845159	T-G	Hetero	INTERGENIC
SBS	Chr7	18645247	T-C	Hetero	INTERGENIC
SBS	Chr7	26882618	T-A	Hetero	INTERGENIC
SBS	Chr8	7103866	T-C	Hetero	INTERGENIC
SBS	Chr8	9171242	A-G	Hetero	INTERGENIC
SBS	Chr8	9719305	A-G	Hetero	INTERGENIC
SBS	Chr8	15546976	G-C	Hetero	INTERGENIC
SBS	Chr8	24566406	G-A	Hetero	INTERGENIC
SBS	Chr9	10783744	A-T	Hetero	INTRON
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr10	17371895	C-A	Hetero	INTERGENIC
SBS	Chr10	22004090	T-C	Hetero	INTERGENIC
SBS	Chr11	21037265	C-T	Hetero	INTERGENIC
SBS	Chr11	21037266	G-T	Hetero	INTERGENIC
SBS	Chr12	8085042	A-G	Homo	INTERGENIC
SBS	Chr12	13122321	C-T	Homo	INTERGENIC
SBS	Chr12	15334474	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	334324	334325	1
Deletion	Chr4	781890	781893	3
Deletion	Chr3	1334163	1334182	19
Deletion	Chr4	1728208	1728215	7
Deletion	Chr9	2696713	2696714	1
Deletion	Chr6	7393027	7393028	1
Deletion	Chr2	7846412	7846420	8
Deletion	Chr4	11608637	11608638	1
Deletion	Chr10	13363054	13363070	16
Deletion	Chr4	17076999	17077007	8
Deletion	Chr12	19210177	19210179	2
Deletion	Chr10	19224937	19224938	1
Deletion	Chr3	21515854	21515866	12
Deletion	Chr5	27046206	27046214	8
Deletion	Chr4	29639772	29639777	5
Deletion	Chr1	33045395	33045412	17
Deletion	Chr4	35187175	35187176	1
Deletion	Chr1	35923327	35923328	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	26863469	26934739
Inversion	Chr11	26863479	26934754

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes