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Mutant Information

Mutant Name	FN-173 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-173 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3179073 G-C Hetero INTERGENIC
SBS Chr1 11200380 G-T Homo INTRON
SBS Chr1 21901095 T-A Hetero INTERGENIC
SBS Chr1 28753973 T-C Hetero INTERGENIC
SBS Chr2 452446 G-A Hetero INTERGENIC
SBS Chr2 6280278 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g084900
SBS Chr2 15259955 T-C Hetero INTERGENIC
SBS Chr2 16124130 C-G Hetero INTERGENIC
SBS Chr2 17798368 T-C Hetero INTERGENIC
SBS Chr2 27464146 G-C Homo INTERGENIC
SBS Chr3 974297 T-C Hetero INTERGENIC
SBS Chr3 1971254 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g028300
SBS Chr3 5138193 C-G Hetero INTERGENIC
SBS Chr3 20230533 A-G Homo INTERGENIC
SBS Chr3 22446373 T-C Homo INTERGENIC
SBS Chr3 23488727 C-A Homo INTERGENIC
SBS Chr3 29386767 T-G Hetero INTERGENIC
SBS Chr3 33452623 A-G Hetero INTERGENIC
SBS Chr3 34378655 G-C Hetero INTERGENIC
SBS Chr3 34482507 T-A Hetero INTERGENIC
SBS Chr3 34670478 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g377300
SBS Chr4 3609798 A-T Homo INTERGENIC
SBS Chr4 18951692 A-T Hetero INTERGENIC
SBS Chr4 23700521 G-T Hetero INTERGENIC
SBS Chr5 8842715 A-T Hetero SYNONYMOUS_CODING
SBS Chr5 14194895 G-A Hetero INTRON
SBS Chr5 15835759 C-T Hetero INTERGENIC
SBS Chr5 28580346 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g267100
SBS Chr5 29178200 C-T Homo INTERGENIC
SBS Chr6 4241555 G-T Hetero INTERGENIC
SBS Chr6 24702331 G-A Hetero INTERGENIC
SBS Chr7 2877652 C-T Hetero INTERGENIC
SBS Chr7 6529114 A-T Hetero INTERGENIC
SBS Chr7 19963579 C-T Homo INTERGENIC
SBS Chr8 8844842 A-G Hetero INTERGENIC
SBS Chr8 8969613 G-T Hetero INTERGENIC
SBS Chr9 192316 G-A Hetero INTERGENIC
SBS Chr9 21208826 T-A Hetero INTERGENIC
SBS Chr10 15971430 G-A Hetero INTERGENIC
SBS Chr11 419689 G-C Hetero INTERGENIC
SBS Chr11 22202343 C-A Hetero INTERGENIC
SBS Chr12 11191766 C-G Hetero SYNONYMOUS_CODING

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3107744 3107745 1
Deletion Chr1 6580563 6580564 1
Deletion Chr6 14724889 14724891 2
Deletion Chr1 16038174 16038176 2
Deletion Chr2 21580849 21580850 1
Deletion Chr1 22078411 22078416 5
Deletion Chr7 22792251 22792255 4
Deletion Chr6 25029150 25029151 1
Deletion Chr1 25037097 25037098 1 OsKitaake01g242300
Deletion Chr11 28786388 28786394 6
Deletion Chr3 33527441 33527448 7

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8736453 8736456 2
Insertion Chr7 13525148 13525150 1
Insertion Chr7 10004433 10004436 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 8478511 9389003
Inversion Chr6 8478513 9367135 OsKitaake06g111000
Inversion Chr6 8587575 9365449 OsKitaake06g111000
Inversion Chr6 8587584 9390847

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 11425854 Chr2 31621777 OsKitaake02g321880

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3179073	G-C	Hetero	INTERGENIC
SBS	Chr1	11200380	G-T	Homo	INTRON
SBS	Chr1	21901095	T-A	Hetero	INTERGENIC
SBS	Chr1	28753973	T-C	Hetero	INTERGENIC
SBS	Chr2	452446	G-A	Hetero	INTERGENIC
SBS	Chr2	6280278	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g084900
SBS	Chr2	15259955	T-C	Hetero	INTERGENIC
SBS	Chr2	16124130	C-G	Hetero	INTERGENIC
SBS	Chr2	17798368	T-C	Hetero	INTERGENIC
SBS	Chr2	27464146	G-C	Homo	INTERGENIC
SBS	Chr3	974297	T-C	Hetero	INTERGENIC
SBS	Chr3	1971254	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g028300
SBS	Chr3	5138193	C-G	Hetero	INTERGENIC
SBS	Chr3	20230533	A-G	Homo	INTERGENIC
SBS	Chr3	22446373	T-C	Homo	INTERGENIC
SBS	Chr3	23488727	C-A	Homo	INTERGENIC
SBS	Chr3	29386767	T-G	Hetero	INTERGENIC
SBS	Chr3	33452623	A-G	Hetero	INTERGENIC
SBS	Chr3	34378655	G-C	Hetero	INTERGENIC
SBS	Chr3	34482507	T-A	Hetero	INTERGENIC
SBS	Chr3	34670478	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g377300
SBS	Chr4	3609798	A-T	Homo	INTERGENIC
SBS	Chr4	18951692	A-T	Hetero	INTERGENIC
SBS	Chr4	23700521	G-T	Hetero	INTERGENIC
SBS	Chr5	8842715	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	14194895	G-A	Hetero	INTRON
SBS	Chr5	15835759	C-T	Hetero	INTERGENIC
SBS	Chr5	28580346	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g267100
SBS	Chr5	29178200	C-T	Homo	INTERGENIC
SBS	Chr6	4241555	G-T	Hetero	INTERGENIC
SBS	Chr6	24702331	G-A	Hetero	INTERGENIC
SBS	Chr7	2877652	C-T	Hetero	INTERGENIC
SBS	Chr7	6529114	A-T	Hetero	INTERGENIC
SBS	Chr7	19963579	C-T	Homo	INTERGENIC
SBS	Chr8	8844842	A-G	Hetero	INTERGENIC
SBS	Chr8	8969613	G-T	Hetero	INTERGENIC
SBS	Chr9	192316	G-A	Hetero	INTERGENIC
SBS	Chr9	21208826	T-A	Hetero	INTERGENIC
SBS	Chr10	15971430	G-A	Hetero	INTERGENIC
SBS	Chr11	419689	G-C	Hetero	INTERGENIC
SBS	Chr11	22202343	C-A	Hetero	INTERGENIC
SBS	Chr12	11191766	C-G	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3107744	3107745	1
Deletion	Chr1	6580563	6580564	1
Deletion	Chr6	14724889	14724891	2
Deletion	Chr1	16038174	16038176	2
Deletion	Chr2	21580849	21580850	1
Deletion	Chr1	22078411	22078416	5
Deletion	Chr7	22792251	22792255	4
Deletion	Chr6	25029150	25029151	1
Deletion	Chr1	25037097	25037098	1	OsKitaake01g242300
Deletion	Chr11	28786388	28786394	6
Deletion	Chr3	33527441	33527448	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8478511	9389003
Inversion	Chr6	8478513	9367135	OsKitaake06g111000
Inversion	Chr6	8587575	9365449	OsKitaake06g111000
Inversion	Chr6	8587584	9390847

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes