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Mutant Information

Mutant Name	FN-174 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-174 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15814346 A-T Homo INTRON
SBS Chr1 33997532 G-T Hetero INTERGENIC
SBS Chr1 37666717 C-T Hetero INTERGENIC
SBS Chr2 7756590 G-A Hetero INTERGENIC
SBS Chr2 10813849 G-A Hetero INTERGENIC
SBS Chr2 11626995 T-A Hetero INTERGENIC
SBS Chr2 19915934 G-A Hetero INTERGENIC
SBS Chr2 27464018 A-C Hetero INTERGENIC
SBS Chr2 29376205 G-T Hetero INTERGENIC
SBS Chr3 6971161 C-A Hetero INTERGENIC
SBS Chr3 10436498 T-A Homo INTERGENIC
SBS Chr3 17914186 C-T Hetero INTERGENIC
SBS Chr3 22112208 G-T Hetero INTRON
SBS Chr3 25856437 T-A Hetero INTERGENIC
SBS Chr3 29204044 G-A Hetero INTRON
SBS Chr3 34830559 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g380000
SBS Chr3 36165242 T-C Hetero UTR_3_PRIME
SBS Chr4 251405 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g001400
SBS Chr4 954134 A-G Hetero INTERGENIC
SBS Chr4 5216745 G-A Hetero INTERGENIC
SBS Chr5 20598128 T-A Homo INTRON
SBS Chr5 23882174 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 27732327 A-C Hetero INTRON
SBS Chr6 18193417 A-T Hetero INTERGENIC
SBS Chr6 18329173 A-C Hetero INTERGENIC
SBS Chr6 19558041 C-G Hetero INTERGENIC
SBS Chr6 26536642 C-T Hetero INTERGENIC
SBS Chr7 1868058 C-T Hetero INTERGENIC
SBS Chr7 8342026 C-T Hetero INTERGENIC
SBS Chr7 12038501 T-C Hetero INTERGENIC
SBS Chr7 20811442 T-C Hetero INTRON
SBS Chr7 21488413 C-T Hetero INTERGENIC
SBS Chr8 18969110 G-C Homo INTERGENIC
SBS Chr8 26128540 A-G Homo INTERGENIC
SBS Chr8 28996028 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g250900
SBS Chr9 8160146 A-G Homo INTERGENIC
SBS Chr9 10447478 G-A Homo UTR_5_PRIME
SBS Chr9 11135621 A-G Homo INTERGENIC
SBS Chr9 17860409 G-C Hetero INTRON
SBS Chr9 21387918 G-T Hetero INTERGENIC
SBS Chr10 16512469 A-G Homo INTRON
SBS Chr10 16879662 A-T Homo INTERGENIC
SBS Chr11 8235834 T-A Hetero INTERGENIC
SBS Chr11 12330703 C-T Homo INTERGENIC
SBS Chr11 27460254 T-A Homo INTERGENIC
SBS Chr11 27460259 C-T Homo INTERGENIC
SBS Chr11 27460265 G-C Homo INTERGENIC
SBS Chr12 12491702 A-G Hetero INTERGENIC
SBS Chr12 16751814 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1754773 1754779 6
Deletion Chr4 2611673 2611681 8
Deletion Chr5 4168927 4168932 5
Deletion Chr6 9820942 9820948 6
Deletion Chr10 10992192 10992194 2 OsKitaake10g065000
Deletion Chr9 13822987 13822992 5
Deletion Chr6 17968355 17968359 4
Deletion Chr3 17975056 17975064 8
Deletion Chr8 18755853 18755855 2
Deletion Chr3 19153721 19153724 3
Deletion Chr5 23527231 23527233 2
Deletion Chr5 28793811 28793815 4
Deletion Chr1 30536918 30536922 4 OsKitaake01g302100

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 32462878 32462881 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3763989 4322387
Inversion Chr11 3763994 4322397
Inversion Chr6 26523664 26582545
Inversion Chr6 26539731 26582543

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10070303 Chr8 5647653 OsKitaake08g061700
Translocation Chr9 10071076 Chr8 5647649 OsKitaake08g061700
Translocation Chr10 19168222 Chr8 1134270 OsKitaake10g138300
Translocation Chr10 19800268 Chr8 1134268 OsKitaake10g147500
Translocation Chr7 28131057 Chr4 20168386 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15814346	A-T	Homo	INTRON
SBS	Chr1	33997532	G-T	Hetero	INTERGENIC
SBS	Chr1	37666717	C-T	Hetero	INTERGENIC
SBS	Chr2	7756590	G-A	Hetero	INTERGENIC
SBS	Chr2	10813849	G-A	Hetero	INTERGENIC
SBS	Chr2	11626995	T-A	Hetero	INTERGENIC
SBS	Chr2	19915934	G-A	Hetero	INTERGENIC
SBS	Chr2	27464018	A-C	Hetero	INTERGENIC
SBS	Chr2	29376205	G-T	Hetero	INTERGENIC
SBS	Chr3	6971161	C-A	Hetero	INTERGENIC
SBS	Chr3	10436498	T-A	Homo	INTERGENIC
SBS	Chr3	17914186	C-T	Hetero	INTERGENIC
SBS	Chr3	22112208	G-T	Hetero	INTRON
SBS	Chr3	25856437	T-A	Hetero	INTERGENIC
SBS	Chr3	29204044	G-A	Hetero	INTRON
SBS	Chr3	34830559	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g380000
SBS	Chr3	36165242	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	251405	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g001400
SBS	Chr4	954134	A-G	Hetero	INTERGENIC
SBS	Chr4	5216745	G-A	Hetero	INTERGENIC
SBS	Chr5	20598128	T-A	Homo	INTRON
SBS	Chr5	23882174	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	27732327	A-C	Hetero	INTRON
SBS	Chr6	18193417	A-T	Hetero	INTERGENIC
SBS	Chr6	18329173	A-C	Hetero	INTERGENIC
SBS	Chr6	19558041	C-G	Hetero	INTERGENIC
SBS	Chr6	26536642	C-T	Hetero	INTERGENIC
SBS	Chr7	1868058	C-T	Hetero	INTERGENIC
SBS	Chr7	8342026	C-T	Hetero	INTERGENIC
SBS	Chr7	12038501	T-C	Hetero	INTERGENIC
SBS	Chr7	20811442	T-C	Hetero	INTRON
SBS	Chr7	21488413	C-T	Hetero	INTERGENIC
SBS	Chr8	18969110	G-C	Homo	INTERGENIC
SBS	Chr8	26128540	A-G	Homo	INTERGENIC
SBS	Chr8	28996028	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g250900
SBS	Chr9	8160146	A-G	Homo	INTERGENIC
SBS	Chr9	10447478	G-A	Homo	UTR_5_PRIME
SBS	Chr9	11135621	A-G	Homo	INTERGENIC
SBS	Chr9	17860409	G-C	Hetero	INTRON
SBS	Chr9	21387918	G-T	Hetero	INTERGENIC
SBS	Chr10	16512469	A-G	Homo	INTRON
SBS	Chr10	16879662	A-T	Homo	INTERGENIC
SBS	Chr11	8235834	T-A	Hetero	INTERGENIC
SBS	Chr11	12330703	C-T	Homo	INTERGENIC
SBS	Chr11	27460254	T-A	Homo	INTERGENIC
SBS	Chr11	27460259	C-T	Homo	INTERGENIC
SBS	Chr11	27460265	G-C	Homo	INTERGENIC
SBS	Chr12	12491702	A-G	Hetero	INTERGENIC
SBS	Chr12	16751814	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1754773	1754779	6
Deletion	Chr4	2611673	2611681	8
Deletion	Chr5	4168927	4168932	5
Deletion	Chr6	9820942	9820948	6
Deletion	Chr10	10992192	10992194	2	OsKitaake10g065000
Deletion	Chr9	13822987	13822992	5
Deletion	Chr6	17968355	17968359	4
Deletion	Chr3	17975056	17975064	8
Deletion	Chr8	18755853	18755855	2
Deletion	Chr3	19153721	19153724	3
Deletion	Chr5	23527231	23527233	2
Deletion	Chr5	28793811	28793815	4
Deletion	Chr1	30536918	30536922	4	OsKitaake01g302100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3763989	4322387
Inversion	Chr11	3763994	4322397
Inversion	Chr6	26523664	26582545
Inversion	Chr6	26539731	26582543

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes