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Mutant Information

Mutant Name	FN-175 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-175 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8470896 C-A Homo UTR_5_PRIME
SBS Chr1 11076329 C-A Hetero START_GAINED
SBS Chr1 11076330 T-C Hetero UTR_5_PRIME
SBS Chr1 11142780 T-C Hetero INTERGENIC
SBS Chr1 11155924 C-A Hetero INTERGENIC
SBS Chr1 11889615 G-A Hetero INTERGENIC
SBS Chr1 17616795 C-T Hetero INTERGENIC
SBS Chr1 20157900 G-A Hetero INTERGENIC
SBS Chr1 36271516 T-C Hetero INTERGENIC
SBS Chr1 40335386 T-A Hetero UTR_3_PRIME
SBS Chr2 1113495 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g016700
SBS Chr2 1849327 T-G Hetero UTR_3_PRIME
SBS Chr2 2670006 T-A Hetero INTERGENIC
SBS Chr2 23621531 C-G Homo INTERGENIC
SBS Chr2 29224968 T-C Homo INTERGENIC
SBS Chr2 34674917 T-A Homo INTERGENIC
SBS Chr2 34674918 T-A Homo INTERGENIC
SBS Chr3 161370 G-C Hetero INTERGENIC
SBS Chr4 5638322 C-T Hetero INTERGENIC
SBS Chr4 19643457 G-T Hetero INTERGENIC
SBS Chr4 32588026 T-C Hetero INTRON
SBS Chr4 35316446 A-T Hetero INTERGENIC
SBS Chr5 10064528 C-A Hetero SYNONYMOUS_CODING
SBS Chr5 11730153 C-A Hetero INTRON
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 18859024 A-C Hetero INTERGENIC
SBS Chr5 19403189 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 20774332 A-T Homo INTRON
SBS Chr5 24843402 G-A Hetero INTERGENIC
SBS Chr6 8761925 G-A Homo INTERGENIC
SBS Chr7 9552879 G-A Homo INTERGENIC
SBS Chr7 10568778 C-A Homo INTERGENIC
SBS Chr7 22272831 T-A Hetero INTERGENIC
SBS Chr7 22490645 G-A Hetero INTERGENIC
SBS Chr7 24032958 T-G Hetero INTERGENIC
SBS Chr7 24662018 A-G Hetero INTERGENIC
SBS Chr7 24701584 A-T Homo INTERGENIC
SBS Chr8 3303917 G-A Hetero INTERGENIC
SBS Chr8 9401287 C-T Homo INTERGENIC
SBS Chr8 19404422 C-T Homo INTERGENIC
SBS Chr9 7962139 C-T Hetero INTERGENIC
SBS Chr10 3683898 C-A Hetero INTERGENIC
SBS Chr10 4984867 G-A Hetero INTERGENIC
SBS Chr11 125911 A-G Hetero UTR_3_PRIME
SBS Chr11 14341646 G-A Hetero INTERGENIC
SBS Chr11 16286062 C-T Hetero INTERGENIC
SBS Chr11 22045149 C-G Homo INTERGENIC
SBS Chr12 5413213 A-C Hetero INTERGENIC
SBS Chr12 8944091 A-T Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 56509 56511 2
Deletion Chr6 378470 378479 9 OsKitaake06g002633
Deletion Chr4 980561 980563 2
Deletion Chr12 6320662 6320664 2
Deletion Chr12 8886712 8886714 2
Deletion Chr8 12158263 12158266 3
Deletion Chr2 13435723 13435730 7
Deletion Chr4 14569637 14569639 2 OsKitaake04g069300
Deletion Chr3 15270636 15270637 1
Deletion Chr10 16384001 16485000 100999 13
Deletion Chr10 16493001 16644000 150999 21
Deletion Chr9 19295893 19295898 5
Deletion Chr8 19802817 19802818 1 OsKitaake08g145900
Deletion Chr6 20622542 20622544 2
Deletion Chr1 22227001 22396000 168999 10
Deletion Chr4 24216930 24216932 2
Deletion Chr3 25658025 25658027 2
Deletion Chr1 36200647 36200648 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 14519147 14519150 2
Insertion Chr4 27793886 27793888 1
Insertion Chr6 12620554 12620557 2
Insertion Chr10 19422165 19422168 2
Insertion Chr10 2697370 2697372 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8470896	C-A	Homo	UTR_5_PRIME
SBS	Chr1	11076329	C-A	Hetero	START_GAINED
SBS	Chr1	11076330	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	11142780	T-C	Hetero	INTERGENIC
SBS	Chr1	11155924	C-A	Hetero	INTERGENIC
SBS	Chr1	11889615	G-A	Hetero	INTERGENIC
SBS	Chr1	17616795	C-T	Hetero	INTERGENIC
SBS	Chr1	20157900	G-A	Hetero	INTERGENIC
SBS	Chr1	36271516	T-C	Hetero	INTERGENIC
SBS	Chr1	40335386	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	1113495	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g016700
SBS	Chr2	1849327	T-G	Hetero	UTR_3_PRIME
SBS	Chr2	2670006	T-A	Hetero	INTERGENIC
SBS	Chr2	23621531	C-G	Homo	INTERGENIC
SBS	Chr2	29224968	T-C	Homo	INTERGENIC
SBS	Chr2	34674917	T-A	Homo	INTERGENIC
SBS	Chr2	34674918	T-A	Homo	INTERGENIC
SBS	Chr3	161370	G-C	Hetero	INTERGENIC
SBS	Chr4	5638322	C-T	Hetero	INTERGENIC
SBS	Chr4	19643457	G-T	Hetero	INTERGENIC
SBS	Chr4	32588026	T-C	Hetero	INTRON
SBS	Chr4	35316446	A-T	Hetero	INTERGENIC
SBS	Chr5	10064528	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	11730153	C-A	Hetero	INTRON
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	18859024	A-C	Hetero	INTERGENIC
SBS	Chr5	19403189	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	20774332	A-T	Homo	INTRON
SBS	Chr5	24843402	G-A	Hetero	INTERGENIC
SBS	Chr6	8761925	G-A	Homo	INTERGENIC
SBS	Chr7	9552879	G-A	Homo	INTERGENIC
SBS	Chr7	10568778	C-A	Homo	INTERGENIC
SBS	Chr7	22272831	T-A	Hetero	INTERGENIC
SBS	Chr7	22490645	G-A	Hetero	INTERGENIC
SBS	Chr7	24032958	T-G	Hetero	INTERGENIC
SBS	Chr7	24662018	A-G	Hetero	INTERGENIC
SBS	Chr7	24701584	A-T	Homo	INTERGENIC
SBS	Chr8	3303917	G-A	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Homo	INTERGENIC
SBS	Chr8	19404422	C-T	Homo	INTERGENIC
SBS	Chr9	7962139	C-T	Hetero	INTERGENIC
SBS	Chr10	3683898	C-A	Hetero	INTERGENIC
SBS	Chr10	4984867	G-A	Hetero	INTERGENIC
SBS	Chr11	125911	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	14341646	G-A	Hetero	INTERGENIC
SBS	Chr11	16286062	C-T	Hetero	INTERGENIC
SBS	Chr11	22045149	C-G	Homo	INTERGENIC
SBS	Chr12	5413213	A-C	Hetero	INTERGENIC
SBS	Chr12	8944091	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	56509	56511	2
Deletion	Chr6	378470	378479	9	OsKitaake06g002633
Deletion	Chr4	980561	980563	2
Deletion	Chr12	6320662	6320664	2
Deletion	Chr12	8886712	8886714	2
Deletion	Chr8	12158263	12158266	3
Deletion	Chr2	13435723	13435730	7
Deletion	Chr4	14569637	14569639	2	OsKitaake04g069300
Deletion	Chr3	15270636	15270637	1
Deletion	Chr10	16384001	16485000	100999	13
Deletion	Chr10	16493001	16644000	150999	21
Deletion	Chr9	19295893	19295898	5
Deletion	Chr8	19802817	19802818	1	OsKitaake08g145900
Deletion	Chr6	20622542	20622544	2
Deletion	Chr1	22227001	22396000	168999	10
Deletion	Chr4	24216930	24216932	2
Deletion	Chr3	25658025	25658027	2
Deletion	Chr1	36200647	36200648	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes