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Mutant Information

Mutant Name	FN-176 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-176 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4626503 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g062100
SBS Chr1 11345632 A-G Hetero INTERGENIC
SBS Chr1 27296959 G-C Hetero INTERGENIC
SBS Chr1 32781567 C-T Homo INTERGENIC
SBS Chr2 9598141 A-G Hetero INTERGENIC
SBS Chr3 1601326 C-A Homo INTERGENIC
SBS Chr3 10045453 G-A Homo INTERGENIC
SBS Chr3 12644757 C-T Homo INTERGENIC
SBS Chr3 14140851 G-A Homo INTERGENIC
SBS Chr3 14666553 G-T Homo INTERGENIC
SBS Chr3 20818978 C-T Homo INTERGENIC
SBS Chr4 8750613 G-A Homo UTR_3_PRIME
SBS Chr4 10385773 C-T Homo INTERGENIC
SBS Chr4 21895396 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 1810091 C-T Hetero INTERGENIC
SBS Chr5 6870267 C-T Hetero UTR_3_PRIME
SBS Chr5 10097770 T-G Hetero INTERGENIC
SBS Chr5 12818415 C-A Hetero INTERGENIC
SBS Chr5 13376601 T-C Hetero INTERGENIC
SBS Chr5 17183299 A-G Hetero INTERGENIC
SBS Chr5 19197351 C-T Hetero INTERGENIC
SBS Chr6 20631286 C-A Hetero INTERGENIC
SBS Chr6 23171178 T-A Hetero INTRON
SBS Chr6 26900828 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g240800
SBS Chr7 1474693 G-C Homo UTR_3_PRIME
SBS Chr7 18890136 T-A Homo START_GAINED
SBS Chr7 21873966 A-C Homo INTERGENIC
SBS Chr7 24046714 C-T Homo INTRON
SBS Chr8 15791380 C-G Hetero INTERGENIC
SBS Chr8 26925097 T-C Homo INTERGENIC
SBS Chr9 1409917 A-G Homo INTERGENIC
SBS Chr9 9451076 G-A Hetero INTRON
SBS Chr9 21135269 A-C Hetero INTRON
SBS Chr10 3466564 A-G Homo INTERGENIC
SBS Chr12 8830127 A-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2520301 2520305 4
Deletion Chr6 3925001 3940000 14999
Deletion Chr1 9859899 9859900 1
Deletion Chr9 19036001 19081000 44999 5
Deletion Chr9 19110001 19127000 16999 3
Deletion Chr2 19565001 19588000 22999 3
Deletion Chr11 23639130 23639131 1
Deletion Chr2 27011904 27011908 4
Deletion Chr7 28346703 28346705 2
Deletion Chr4 28747701 28747708 7
Deletion Chr3 33882720 33882724 4

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 22848895 22848898 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4626503	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g062100
SBS	Chr1	11345632	A-G	Hetero	INTERGENIC
SBS	Chr1	27296959	G-C	Hetero	INTERGENIC
SBS	Chr1	32781567	C-T	Homo	INTERGENIC
SBS	Chr2	9598141	A-G	Hetero	INTERGENIC
SBS	Chr3	1601326	C-A	Homo	INTERGENIC
SBS	Chr3	10045453	G-A	Homo	INTERGENIC
SBS	Chr3	12644757	C-T	Homo	INTERGENIC
SBS	Chr3	14140851	G-A	Homo	INTERGENIC
SBS	Chr3	14666553	G-T	Homo	INTERGENIC
SBS	Chr3	20818978	C-T	Homo	INTERGENIC
SBS	Chr4	8750613	G-A	Homo	UTR_3_PRIME
SBS	Chr4	10385773	C-T	Homo	INTERGENIC
SBS	Chr4	21895396	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	1810091	C-T	Hetero	INTERGENIC
SBS	Chr5	6870267	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	10097770	T-G	Hetero	INTERGENIC
SBS	Chr5	12818415	C-A	Hetero	INTERGENIC
SBS	Chr5	13376601	T-C	Hetero	INTERGENIC
SBS	Chr5	17183299	A-G	Hetero	INTERGENIC
SBS	Chr5	19197351	C-T	Hetero	INTERGENIC
SBS	Chr6	20631286	C-A	Hetero	INTERGENIC
SBS	Chr6	23171178	T-A	Hetero	INTRON
SBS	Chr6	26900828	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g240800
SBS	Chr7	1474693	G-C	Homo	UTR_3_PRIME
SBS	Chr7	18890136	T-A	Homo	START_GAINED
SBS	Chr7	21873966	A-C	Homo	INTERGENIC
SBS	Chr7	24046714	C-T	Homo	INTRON
SBS	Chr8	15791380	C-G	Hetero	INTERGENIC
SBS	Chr8	26925097	T-C	Homo	INTERGENIC
SBS	Chr9	1409917	A-G	Homo	INTERGENIC
SBS	Chr9	9451076	G-A	Hetero	INTRON
SBS	Chr9	21135269	A-C	Hetero	INTRON
SBS	Chr10	3466564	A-G	Homo	INTERGENIC
SBS	Chr12	8830127	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2520301	2520305	4
Deletion	Chr6	3925001	3940000	14999
Deletion	Chr1	9859899	9859900	1
Deletion	Chr9	19036001	19081000	44999	5
Deletion	Chr9	19110001	19127000	16999	3
Deletion	Chr2	19565001	19588000	22999	3
Deletion	Chr11	23639130	23639131	1
Deletion	Chr2	27011904	27011908	4
Deletion	Chr7	28346703	28346705	2
Deletion	Chr4	28747701	28747708	7
Deletion	Chr3	33882720	33882724	4

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes