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| Mutant Information |
|---|
| Mutant Name | FN-178 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-178 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5637114 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 10329691 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 34719525 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 1025872 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10006557 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 14404289 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18515528 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23309112 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g250900 |
| SBS | Chr4 | 9800030 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14716936 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16677167 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 34212760 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 196988 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 13986824 | T-A | Hetero | INTRON | |
| SBS | Chr5 | 15502690 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16458145 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 18199760 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18776249 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 28279038 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7088201 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 7717070 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2442964 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 17385210 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 19222637 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 14181950 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16487841 | G-C | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 20661774 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12427562 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 13067450 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16182225 | G-C | Hetero | INTRON | |
| SBS | Chr11 | 25293383 | T-C | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 8168471 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18141727 | G-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 513028 | 513030 | 2 | |
| Deletion | Chr1 | 1440770 | 1440771 | 1 | |
| Deletion | Chr7 | 1857504 | 1857508 | 4 | |
| Deletion | Chr7 | 2803001 | 2803003 | 2 | |
| Deletion | Chr1 | 7293622 | 7293638 | 16 | |
| Deletion | Chr12 | 7589724 | 7589726 | 2 | |
| Deletion | Chr1 | 7804471 | 7804475 | 4 | |
| Deletion | Chr1 | 7892585 | 7892586 | 1 | |
| Deletion | Chr9 | 10455405 | 10455411 | 6 | |
| Deletion | Chr10 | 13772215 | 13772216 | 1 | |
| Deletion | Chr9 | 16401477 | 16401481 | 4 | |
| Deletion | Chr1 | 25951375 | 25951384 | 9 | |
| Deletion | Chr2 | 27791231 | 27791232 | 1 | OsKitaake02g279400 |
| Deletion | Chr4 | 27967508 | 27967509 | 1 | OsKitaake04g207700 |
| Deletion | Chr1 | 34166022 | 34166025 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 27140757 | 27140760 | 2 | |
| Insertion | Chr3 | 22492942 | 22492944 | 1 | |
| Insertion | Chr12 | 11689040 | 11689042 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 21440779 | 21470096 | |
| Inversion | Chr2 | 21440784 | 21470098 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 3575835 | Chr5 | 4090211 | |
| Translocation | Chr11 | 3576135 | Chr5 | 10053274 | |
| Translocation | Chr5 | 4090246 | Chr4 | 35149195 | |
| Translocation | Chr5 | 10053265 | Chr4 | 35149194 |