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| Mutant Information |
|---|
| Mutant Name | FN-179 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-179 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9642894 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 21228268 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 35978172 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 41498581 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 4476372 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 13792486 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 5401129 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17056672 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21306124 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 30354478 | T-G | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 31725113 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8818191 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 9659636 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 18164739 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 26457496 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8660741 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11588502 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 13876284 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 15174512 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19616576 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29604894 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26823164 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 26889491 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26985752 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 24703698 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 24703700 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 7080457 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8844422 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9872415 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 13590414 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20320288 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g154700 |
| SBS | Chr11 | 19840287 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25591660 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6437475 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 6590831 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 7651786 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 10746294 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 11968693 | A-T | Hetero | INTRON |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 960970 | 961064 | 94 | OsKitaake12g014050 |
| Deletion | Chr6 | 1275512 | 1275513 | 1 | |
| Deletion | Chr8 | 18481404 | 18481710 | 306 | |
| Deletion | Chr11 | 18934231 | 18934232 | 1 | OsKitaake11g147600 |
| Deletion | Chr6 | 19496007 | 19496008 | 1 | |
| Deletion | Chr2 | 20550466 | 20550788 | 322 | |
| Deletion | Chr2 | 21027283 | 21027287 | 4 | |
| Deletion | Chr11 | 21657101 | 21657102 | 1 | OsKitaake11g171400 |
| Deletion | Chr6 | 22052144 | 22052146 | 2 | OsKitaake06g194200 |
| Deletion | Chr3 | 24683954 | 24683958 | 4 | |
| Deletion | Chr8 | 25005453 | 25005454 | 1 | |
| Deletion | Chr11 | 26434001 | 26462000 | 27999 | 3 |
| Deletion | Chr6 | 30906404 | 30906408 | 4 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 30259113 | 30259115 | 1 | |
| Insertion | Chr5 | 12990612 | 12990615 | 2 | |
| Insertion | Chr8 | 8240831 | 8240834 | 2 | |
| Insertion | Chr1 | 15144081 | 15144085 | 3 | OsKitaake01g144000  |
| Insertion | Chr4 | 18345247 | 18345250 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 19956051 | 20039560 | |
| Inversion | Chr9 | 19956061 | 20039578 | |
| Inversion | Chr6 | 25558546 | 26440477 | 2 |
| Inversion | Chr6 | 25558555 | 26440483 | 2 |