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Mutant Information

Mutant Name	FN-18 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-18 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 39008142 A-G Homo INTERGENIC
SBS Chr2 13860229 A-C Hetero INTERGENIC
SBS Chr2 19741181 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g193100
SBS Chr2 19741182 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g193100
SBS Chr2 22376165 G-C Hetero INTERGENIC
SBS Chr3 32313144 C-T Hetero INTERGENIC
SBS Chr4 3010147 A-T Hetero INTERGENIC
SBS Chr4 26894705 C-A Hetero INTRON
SBS Chr5 10985263 G-A Hetero INTERGENIC
SBS Chr5 15635160 C-A Hetero INTERGENIC
SBS Chr5 28272506 A-C Hetero INTRON
SBS Chr5 28543994 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g266600
SBS Chr5 28543995 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g266600
SBS Chr5 30023409 A-G Hetero INTERGENIC
SBS Chr6 8376769 G-A Hetero INTERGENIC
SBS Chr6 13330545 C-T Hetero INTERGENIC
SBS Chr6 20470103 A-G Homo INTRON
SBS Chr7 8802505 A-C Homo INTERGENIC
SBS Chr7 15997667 G-C Hetero UTR_5_PRIME
SBS Chr7 24145941 C-T Hetero INTERGENIC
SBS Chr7 25231077 C-A Hetero INTERGENIC
SBS Chr8 1438567 G-A Hetero INTERGENIC
SBS Chr9 11148433 T-A Hetero INTERGENIC
SBS Chr10 5706917 G-A Hetero INTERGENIC
SBS Chr10 11953744 T-C Hetero INTERGENIC
SBS Chr10 16124292 T-C Hetero INTERGENIC
SBS Chr11 9219034 A-G Hetero INTERGENIC
SBS Chr11 13498596 T-C Hetero INTERGENIC
SBS Chr11 19848764 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 5445034 T-G Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1826348 1826401 53
Deletion Chr12 2555889 2555902 13
Deletion Chr7 3075334 3075336 2 OsKitaake07g038600
Deletion Chr11 4806360 4806374 14
Deletion Chr9 5925710 5925719 9
Deletion Chr6 6065224 6065226 2 OsKitaake06g079800
Deletion Chr3 6251848 6251851 3
Deletion Chr3 8316147 8316163 16
Deletion Chr3 8386712 8386713 1
Deletion Chr3 10265517 10265522 5
Deletion Chr12 14179303 14179314 11
Deletion Chr6 14417374 14417377 3
Deletion Chr7 15967278 15967281 3
Deletion Chr8 17631842 17631844 2
Deletion Chr6 18117037 18117046 9
Deletion Chr4 18252373 18252375 2
Deletion Chr10 18686981 18686983 2
Deletion Chr1 19516860 19516867 7
Deletion Chr3 21073902 21073910 8
Deletion Chr9 21505331 21505347 16
Deletion Chr9 22209538 22209539 1
Deletion Chr4 27180009 27180015 6
Deletion Chr5 30071159 30071160 1
Deletion Chr2 35183171 35183180 9
Deletion Chr1 37715591 37715592 1
Deletion Chr1 38959776 38959782 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 28946850 28946858 7
Insertion Chr8 8157958 8157960 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 17188751 17387187 OsKitaake02g174800
Inversion Chr2 17189316 17387768 OsKitaake02g174800
Inversion Chr5 27886596 28290278 OsKitaake05g262900
Inversion Chr5 27886599 28290276 OsKitaake05g262900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 15765672 Chr2 17387767 OsKitaake02g174800
Translocation Chr3 15765676 Chr2 17387190 OsKitaake02g174800
Translocation Chr11 22187006 Chr6 14121929

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39008142	A-G	Homo	INTERGENIC
SBS	Chr2	13860229	A-C	Hetero	INTERGENIC
SBS	Chr2	19741181	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g193100
SBS	Chr2	19741182	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g193100
SBS	Chr2	22376165	G-C	Hetero	INTERGENIC
SBS	Chr3	32313144	C-T	Hetero	INTERGENIC
SBS	Chr4	3010147	A-T	Hetero	INTERGENIC
SBS	Chr4	26894705	C-A	Hetero	INTRON
SBS	Chr5	10985263	G-A	Hetero	INTERGENIC
SBS	Chr5	15635160	C-A	Hetero	INTERGENIC
SBS	Chr5	28272506	A-C	Hetero	INTRON
SBS	Chr5	28543994	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g266600
SBS	Chr5	28543995	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g266600
SBS	Chr5	30023409	A-G	Hetero	INTERGENIC
SBS	Chr6	8376769	G-A	Hetero	INTERGENIC
SBS	Chr6	13330545	C-T	Hetero	INTERGENIC
SBS	Chr6	20470103	A-G	Homo	INTRON
SBS	Chr7	8802505	A-C	Homo	INTERGENIC
SBS	Chr7	15997667	G-C	Hetero	UTR_5_PRIME
SBS	Chr7	24145941	C-T	Hetero	INTERGENIC
SBS	Chr7	25231077	C-A	Hetero	INTERGENIC
SBS	Chr8	1438567	G-A	Hetero	INTERGENIC
SBS	Chr9	11148433	T-A	Hetero	INTERGENIC
SBS	Chr10	5706917	G-A	Hetero	INTERGENIC
SBS	Chr10	11953744	T-C	Hetero	INTERGENIC
SBS	Chr10	16124292	T-C	Hetero	INTERGENIC
SBS	Chr11	9219034	A-G	Hetero	INTERGENIC
SBS	Chr11	13498596	T-C	Hetero	INTERGENIC
SBS	Chr11	19848764	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	5445034	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1826348	1826401	53
Deletion	Chr12	2555889	2555902	13
Deletion	Chr7	3075334	3075336	2	OsKitaake07g038600
Deletion	Chr11	4806360	4806374	14
Deletion	Chr9	5925710	5925719	9
Deletion	Chr6	6065224	6065226	2	OsKitaake06g079800
Deletion	Chr3	6251848	6251851	3
Deletion	Chr3	8316147	8316163	16
Deletion	Chr3	8386712	8386713	1
Deletion	Chr3	10265517	10265522	5
Deletion	Chr12	14179303	14179314	11
Deletion	Chr6	14417374	14417377	3
Deletion	Chr7	15967278	15967281	3
Deletion	Chr8	17631842	17631844	2
Deletion	Chr6	18117037	18117046	9
Deletion	Chr4	18252373	18252375	2
Deletion	Chr10	18686981	18686983	2
Deletion	Chr1	19516860	19516867	7
Deletion	Chr3	21073902	21073910	8
Deletion	Chr9	21505331	21505347	16
Deletion	Chr9	22209538	22209539	1
Deletion	Chr4	27180009	27180015	6
Deletion	Chr5	30071159	30071160	1
Deletion	Chr2	35183171	35183180	9
Deletion	Chr1	37715591	37715592	1
Deletion	Chr1	38959776	38959782	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	17188751	17387187	OsKitaake02g174800
Inversion	Chr2	17189316	17387768	OsKitaake02g174800
Inversion	Chr5	27886596	28290278	OsKitaake05g262900
Inversion	Chr5	27886599	28290276	OsKitaake05g262900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes