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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-180 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-180 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8887114 T-G Homo INTERGENIC
SBS Chr1 21207192 G-C Homo INTERGENIC
SBS Chr1 35273310 A-G Hetero INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 20389935 T-C Hetero INTERGENIC
SBS Chr2 20931818 G-A Hetero INTRON
SBS Chr2 21315271 T-C Hetero INTERGENIC
SBS Chr2 35371033 T-A Hetero INTRON
SBS Chr3 17246182 G-A Hetero INTERGENIC
SBS Chr3 19319515 G-A Homo INTERGENIC
SBS Chr3 29178250 G-C Hetero INTERGENIC
SBS Chr4 12798299 G-A Hetero INTERGENIC
SBS Chr4 16205078 T-C Hetero INTRON
SBS Chr4 36807020 G-A Hetero INTERGENIC
SBS Chr5 5604687 C-G Hetero INTERGENIC
SBS Chr5 5604689 T-C Hetero INTERGENIC
SBS Chr5 10240218 G-A Hetero INTERGENIC
SBS Chr7 7218544 C-T Hetero INTERGENIC
SBS Chr7 11544443 T-C Homo INTRON
SBS Chr7 23246371 C-T Hetero INTRON
SBS Chr8 16286897 G-A Hetero INTERGENIC
SBS Chr8 21056518 G-A Hetero INTERGENIC
SBS Chr9 5609542 G-A Hetero INTERGENIC
SBS Chr9 10115499 C-T Hetero INTERGENIC
SBS Chr9 11744145 A-C Hetero INTERGENIC
SBS Chr9 18656702 A-G Homo INTERGENIC
SBS Chr10 14289 T-G Hetero INTERGENIC
SBS Chr10 16108277 T-G Homo INTRON
SBS Chr11 9243056 T-G Hetero UTR_5_PRIME
SBS Chr11 10403189 C-G Hetero INTRON
SBS Chr11 25914481 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1880125 1880127 2 OsKitaake05g021000
Deletion Chr10 12395001 12740000 344999 33
Deletion Chr9 13753024 13753029 5
Deletion Chr9 13831001 13845000 13999 2
Deletion Chr2 13839618 13839620 2
Deletion Chr2 17246239 17246243 4
Deletion Chr10 17861740 17861750 10
Deletion Chr10 17926391 17926397 6 OsKitaake10g125500
Deletion Chr4 18661001 18704000 42999 2
Deletion Chr10 20386162 20386168 6
Deletion Chr6 20766198 20766200 2
Deletion Chr4 21864783 21864785 2
Deletion Chr7 21976534 21976536 2
Deletion Chr10 22376602 22376612 10 OsKitaake10g183600
Deletion Chr5 22650969 22650971 2
Deletion Chr4 24598146 24598148 2
Deletion Chr6 27159774 27159776 2
Deletion Chr4 33660321 33660323 2
Deletion Chr2 35361276 35361286 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 19091487 19091490 2
Insertion Chr12 23151755 23151757 1
Insertion Chr12 16857059 16857061 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 983945 1001093
Inversion Chr5 983951 1001096
Inversion Chr4 18701883 19041354 2
Inversion Chr4 19033251 19041346 OsKitaake04g095900
Inversion Chr12 27089891 27117061 2
Inversion Chr12 27106318 27117049 OsKitaake12g228300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3512271 Chr9 8049384
Translocation Chr12 3512638 Chr9 8049286

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8887114	T-G	Homo	INTERGENIC
SBS	Chr1	21207192	G-C	Homo	INTERGENIC
SBS	Chr1	35273310	A-G	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	20389935	T-C	Hetero	INTERGENIC
SBS	Chr2	20931818	G-A	Hetero	INTRON
SBS	Chr2	21315271	T-C	Hetero	INTERGENIC
SBS	Chr2	35371033	T-A	Hetero	INTRON
SBS	Chr3	17246182	G-A	Hetero	INTERGENIC
SBS	Chr3	19319515	G-A	Homo	INTERGENIC
SBS	Chr3	29178250	G-C	Hetero	INTERGENIC
SBS	Chr4	12798299	G-A	Hetero	INTERGENIC
SBS	Chr4	16205078	T-C	Hetero	INTRON
SBS	Chr4	36807020	G-A	Hetero	INTERGENIC
SBS	Chr5	5604687	C-G	Hetero	INTERGENIC
SBS	Chr5	5604689	T-C	Hetero	INTERGENIC
SBS	Chr5	10240218	G-A	Hetero	INTERGENIC
SBS	Chr7	7218544	C-T	Hetero	INTERGENIC
SBS	Chr7	11544443	T-C	Homo	INTRON
SBS	Chr7	23246371	C-T	Hetero	INTRON
SBS	Chr8	16286897	G-A	Hetero	INTERGENIC
SBS	Chr8	21056518	G-A	Hetero	INTERGENIC
SBS	Chr9	5609542	G-A	Hetero	INTERGENIC
SBS	Chr9	10115499	C-T	Hetero	INTERGENIC
SBS	Chr9	11744145	A-C	Hetero	INTERGENIC
SBS	Chr9	18656702	A-G	Homo	INTERGENIC
SBS	Chr10	14289	T-G	Hetero	INTERGENIC
SBS	Chr10	16108277	T-G	Homo	INTRON
SBS	Chr11	9243056	T-G	Hetero	UTR_5_PRIME
SBS	Chr11	10403189	C-G	Hetero	INTRON
SBS	Chr11	25914481	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1880125	1880127	2	OsKitaake05g021000
Deletion	Chr10	12395001	12740000	344999	33
Deletion	Chr9	13753024	13753029	5
Deletion	Chr9	13831001	13845000	13999	2
Deletion	Chr2	13839618	13839620	2
Deletion	Chr2	17246239	17246243	4
Deletion	Chr10	17861740	17861750	10
Deletion	Chr10	17926391	17926397	6	OsKitaake10g125500
Deletion	Chr4	18661001	18704000	42999	2
Deletion	Chr10	20386162	20386168	6
Deletion	Chr6	20766198	20766200	2
Deletion	Chr4	21864783	21864785	2
Deletion	Chr7	21976534	21976536	2
Deletion	Chr10	22376602	22376612	10	OsKitaake10g183600
Deletion	Chr5	22650969	22650971	2
Deletion	Chr4	24598146	24598148	2
Deletion	Chr6	27159774	27159776	2
Deletion	Chr4	33660321	33660323	2
Deletion	Chr2	35361276	35361286	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	983945	1001093
Inversion	Chr5	983951	1001096
Inversion	Chr4	18701883	19041354	2
Inversion	Chr4	19033251	19041346	OsKitaake04g095900
Inversion	Chr12	27089891	27117061	2
Inversion	Chr12	27106318	27117049	OsKitaake12g228300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes