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Mutant Information

Mutant Name	FN-181 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-181 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1467886 T-A Hetero INTERGENIC
SBS Chr1 3172793 A-G Hetero INTERGENIC
SBS Chr1 14722477 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g166700
SBS Chr1 14821470 C-T Hetero INTERGENIC
SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr1 34292223 G-T Homo INTRON
SBS Chr2 4208714 C-T Hetero INTERGENIC
SBS Chr2 7816652 T-A Hetero INTERGENIC
SBS Chr2 12737815 C-T Hetero INTERGENIC
SBS Chr2 13021522 A-G Hetero INTRON
SBS Chr2 19531979 G-A Hetero INTERGENIC
SBS Chr2 27790977 A-C Homo INTRON
SBS Chr2 31386111 A-C Hetero INTERGENIC
SBS Chr2 33995832 C-G Hetero INTERGENIC
SBS Chr2 34879422 A-T Hetero UTR_5_PRIME
SBS Chr2 34879423 A-T Hetero UTR_5_PRIME
SBS Chr3 21044798 T-C Hetero INTRON
SBS Chr3 21169130 C-T Homo INTERGENIC
SBS Chr3 23294401 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g250600
SBS Chr3 23919122 G-A Hetero INTERGENIC
SBS Chr3 30239608 C-A Hetero INTERGENIC
SBS Chr3 30498168 G-A Homo INTERGENIC
SBS Chr3 37271595 A-T Homo INTERGENIC
SBS Chr4 1386882 A-G Hetero INTERGENIC
SBS Chr4 6356975 C-T Hetero INTERGENIC
SBS Chr4 9103660 G-A Hetero INTERGENIC
SBS Chr4 28934006 G-C Hetero INTERGENIC
SBS Chr5 9991981 G-A Hetero INTERGENIC
SBS Chr5 18532003 G-T Hetero INTERGENIC
SBS Chr5 24060774 G-A Hetero INTRON
SBS Chr6 289645 C-T Hetero INTRON
SBS Chr7 1330491 T-C Hetero INTRON
SBS Chr7 4685957 C-T Hetero INTERGENIC
SBS Chr7 9054977 A-G Hetero INTERGENIC
SBS Chr7 10396342 C-T Hetero INTERGENIC
SBS Chr7 18114605 C-T Homo INTERGENIC
SBS Chr7 25642127 A-C Hetero INTERGENIC
SBS Chr8 3868631 G-T Hetero INTERGENIC
SBS Chr9 3011651 G-T Hetero INTERGENIC
SBS Chr9 5257486 T-A Hetero INTERGENIC
SBS Chr9 6161951 T-A Hetero INTRON
SBS Chr10 7308093 C-T Hetero INTERGENIC
SBS Chr10 13965744 G-A Hetero INTERGENIC
SBS Chr11 1569531 A-G Homo INTRON
SBS Chr11 16230898 G-C Hetero INTERGENIC
SBS Chr11 27948461 C-T Hetero INTERGENIC
SBS Chr12 4513301 A-C Homo INTERGENIC
SBS Chr12 7218148 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g080400
SBS Chr12 7476077 T-C Hetero INTERGENIC
SBS Chr12 10934589 T-C Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3443736 3443739 3
Deletion Chr11 6773923 6773925 2
Deletion Chr6 7489307 7489308 1
Deletion Chr8 8592146 8592151 5
Deletion Chr3 13217049 13217051 2
Deletion Chr11 13680361 13680366 5
Deletion Chr4 16813117 16813122 5
Deletion Chr3 19951620 19951621 1
Deletion Chr5 20500307 20500308 1
Deletion Chr8 20511301 20511302 1
Deletion Chr9 21992884 21992891 7 OsKitaake09g196200
Deletion Chr8 22495340 22495341 1
Deletion Chr8 23864726 23864728 2
Deletion Chr11 24656541 24656570 29
Deletion Chr8 25777951 25777958 7
Deletion Chr7 26398360 26398369 9
Deletion Chr12 26558063 26558081 18
Deletion Chr4 28009549 28009552 3 OsKitaake04g208400
Deletion Chr2 30599691 30599694 3 OsKitaake02g312900
Deletion Chr1 40413001 40423000 9999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr3 27078788 27078790 1
Insertion Chr5 17550115 17550118 2
Insertion Chr4 4705631 4705633 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 18211937 18222768
Inversion Chr4 18222787 18230317
Inversion Chr5 28066867 28156936 2
Inversion Chr4 28490310 28710480 2
Inversion Chr4 28490321 28710485 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 8265928 Chr4 20672803 OsKitaake11g090600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1467886	T-A	Hetero	INTERGENIC
SBS	Chr1	3172793	A-G	Hetero	INTERGENIC
SBS	Chr1	14722477	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g166700
SBS	Chr1	14821470	C-T	Hetero	INTERGENIC
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr1	34292223	G-T	Homo	INTRON
SBS	Chr2	4208714	C-T	Hetero	INTERGENIC
SBS	Chr2	7816652	T-A	Hetero	INTERGENIC
SBS	Chr2	12737815	C-T	Hetero	INTERGENIC
SBS	Chr2	13021522	A-G	Hetero	INTRON
SBS	Chr2	19531979	G-A	Hetero	INTERGENIC
SBS	Chr2	27790977	A-C	Homo	INTRON
SBS	Chr2	31386111	A-C	Hetero	INTERGENIC
SBS	Chr2	33995832	C-G	Hetero	INTERGENIC
SBS	Chr2	34879422	A-T	Hetero	UTR_5_PRIME
SBS	Chr2	34879423	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	21044798	T-C	Hetero	INTRON
SBS	Chr3	21169130	C-T	Homo	INTERGENIC
SBS	Chr3	23294401	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g250600
SBS	Chr3	23919122	G-A	Hetero	INTERGENIC
SBS	Chr3	30239608	C-A	Hetero	INTERGENIC
SBS	Chr3	30498168	G-A	Homo	INTERGENIC
SBS	Chr3	37271595	A-T	Homo	INTERGENIC
SBS	Chr4	1386882	A-G	Hetero	INTERGENIC
SBS	Chr4	6356975	C-T	Hetero	INTERGENIC
SBS	Chr4	9103660	G-A	Hetero	INTERGENIC
SBS	Chr4	28934006	G-C	Hetero	INTERGENIC
SBS	Chr5	9991981	G-A	Hetero	INTERGENIC
SBS	Chr5	18532003	G-T	Hetero	INTERGENIC
SBS	Chr5	24060774	G-A	Hetero	INTRON
SBS	Chr6	289645	C-T	Hetero	INTRON
SBS	Chr7	1330491	T-C	Hetero	INTRON
SBS	Chr7	4685957	C-T	Hetero	INTERGENIC
SBS	Chr7	9054977	A-G	Hetero	INTERGENIC
SBS	Chr7	10396342	C-T	Hetero	INTERGENIC
SBS	Chr7	18114605	C-T	Homo	INTERGENIC
SBS	Chr7	25642127	A-C	Hetero	INTERGENIC
SBS	Chr8	3868631	G-T	Hetero	INTERGENIC
SBS	Chr9	3011651	G-T	Hetero	INTERGENIC
SBS	Chr9	5257486	T-A	Hetero	INTERGENIC
SBS	Chr9	6161951	T-A	Hetero	INTRON
SBS	Chr10	7308093	C-T	Hetero	INTERGENIC
SBS	Chr10	13965744	G-A	Hetero	INTERGENIC
SBS	Chr11	1569531	A-G	Homo	INTRON
SBS	Chr11	16230898	G-C	Hetero	INTERGENIC
SBS	Chr11	27948461	C-T	Hetero	INTERGENIC
SBS	Chr12	4513301	A-C	Homo	INTERGENIC
SBS	Chr12	7218148	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g080400
SBS	Chr12	7476077	T-C	Hetero	INTERGENIC
SBS	Chr12	10934589	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3443736	3443739	3
Deletion	Chr11	6773923	6773925	2
Deletion	Chr6	7489307	7489308	1
Deletion	Chr8	8592146	8592151	5
Deletion	Chr3	13217049	13217051	2
Deletion	Chr11	13680361	13680366	5
Deletion	Chr4	16813117	16813122	5
Deletion	Chr3	19951620	19951621	1
Deletion	Chr5	20500307	20500308	1
Deletion	Chr8	20511301	20511302	1
Deletion	Chr9	21992884	21992891	7	OsKitaake09g196200
Deletion	Chr8	22495340	22495341	1
Deletion	Chr8	23864726	23864728	2
Deletion	Chr11	24656541	24656570	29
Deletion	Chr8	25777951	25777958	7
Deletion	Chr7	26398360	26398369	9
Deletion	Chr12	26558063	26558081	18
Deletion	Chr4	28009549	28009552	3	OsKitaake04g208400
Deletion	Chr2	30599691	30599694	3	OsKitaake02g312900
Deletion	Chr1	40413001	40423000	9999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	18211937	18222768
Inversion	Chr4	18222787	18230317
Inversion	Chr5	28066867	28156936	2
Inversion	Chr4	28490310	28710480	2
Inversion	Chr4	28490321	28710485	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes