Search Kitaake

Mutant Information

Mutant Name	FN-182 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-182 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3482723 G-A Hetero INTERGENIC
SBS Chr1 7906902 C-T Hetero INTERGENIC
SBS Chr1 17449512 G-A Hetero INTERGENIC
SBS Chr2 1243499 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 6397896 G-A Hetero INTERGENIC
SBS Chr2 18603585 A-G Homo INTERGENIC
SBS Chr2 21484136 T-A Hetero INTRON
SBS Chr2 24122038 G-T Hetero INTERGENIC
SBS Chr2 33462951 C-G Hetero INTERGENIC
SBS Chr4 4220925 C-T Hetero INTERGENIC
SBS Chr4 7739997 A-G Hetero INTERGENIC
SBS Chr4 12768040 T-C Hetero INTRON
SBS Chr4 21536332 A-G Hetero INTRON
SBS Chr4 27339029 C-T Hetero INTERGENIC
SBS Chr4 29970737 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g230200
SBS Chr4 30504412 G-A Hetero INTERGENIC
SBS Chr5 23967860 T-C Hetero INTERGENIC
SBS Chr5 29711600 C-T Hetero INTERGENIC
SBS Chr6 4113126 T-C Homo SYNONYMOUS_CODING
SBS Chr6 14705082 A-T Hetero INTERGENIC
SBS Chr6 22986465 G-A Hetero INTRON
SBS Chr6 22986466 T-G Hetero INTRON
SBS Chr6 26833606 C-T Hetero INTERGENIC
SBS Chr7 7191988 C-A Hetero UTR_5_PRIME
SBS Chr7 18302483 G-C Hetero INTERGENIC
SBS Chr7 21932263 G-T Hetero INTRON
SBS Chr8 13995283 G-A Hetero INTERGENIC
SBS Chr8 15759541 C-A Hetero INTRON
SBS Chr8 19607082 T-C Hetero INTERGENIC
SBS Chr9 1809492 C-T Hetero INTERGENIC
SBS Chr9 10744095 G-T Hetero INTERGENIC
SBS Chr9 15362118 T-A Homo INTERGENIC
SBS Chr9 17686683 G-T Homo NON_SYNONYMOUS_CODING OsKitaake09g133800
SBS Chr10 16469014 G-A Hetero INTERGENIC
SBS Chr11 657247 T-A Hetero INTERGENIC
SBS Chr11 17386278 G-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1666153 1666158 5
Deletion Chr10 2246240 2246242 2
Deletion Chr11 3990614 3990621 7
Deletion Chr9 5668904 5668911 7
Deletion Chr1 9490632 9490639 7
Deletion Chr10 12114603 12114604 1
Deletion Chr4 13882464 13882465 1
Deletion Chr2 16616671 16616673 2
Deletion Chr4 16738842 16738843 1
Deletion Chr1 17426340 17426341 1
Deletion Chr3 17527360 17527368 8
Deletion Chr4 17750817 17750824 7
Deletion Chr2 18603505 18603512 7
Deletion Chr11 20360511 20360512 1 OsKitaake11g159300
Deletion Chr2 20515101 20515102 1
Deletion Chr4 22019932 22019938 6
Deletion Chr4 25650599 25650602 3 OsKitaake04g178100
Deletion Chr1 25714169 25714170 1 OsKitaake01g250000
Deletion Chr1 28675876 28675879 3
Deletion Chr4 33422336 33422341 5 OsKitaake04g274500
Deletion Chr1 41571546 41571558 12

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 25711553 25908531
Inversion Chr1 25711580 25908539

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3482723	G-A	Hetero	INTERGENIC
SBS	Chr1	7906902	C-T	Hetero	INTERGENIC
SBS	Chr1	17449512	G-A	Hetero	INTERGENIC
SBS	Chr2	1243499	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	6397896	G-A	Hetero	INTERGENIC
SBS	Chr2	18603585	A-G	Homo	INTERGENIC
SBS	Chr2	21484136	T-A	Hetero	INTRON
SBS	Chr2	24122038	G-T	Hetero	INTERGENIC
SBS	Chr2	33462951	C-G	Hetero	INTERGENIC
SBS	Chr4	4220925	C-T	Hetero	INTERGENIC
SBS	Chr4	7739997	A-G	Hetero	INTERGENIC
SBS	Chr4	12768040	T-C	Hetero	INTRON
SBS	Chr4	21536332	A-G	Hetero	INTRON
SBS	Chr4	27339029	C-T	Hetero	INTERGENIC
SBS	Chr4	29970737	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g230200
SBS	Chr4	30504412	G-A	Hetero	INTERGENIC
SBS	Chr5	23967860	T-C	Hetero	INTERGENIC
SBS	Chr5	29711600	C-T	Hetero	INTERGENIC
SBS	Chr6	4113126	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr6	14705082	A-T	Hetero	INTERGENIC
SBS	Chr6	22986465	G-A	Hetero	INTRON
SBS	Chr6	22986466	T-G	Hetero	INTRON
SBS	Chr6	26833606	C-T	Hetero	INTERGENIC
SBS	Chr7	7191988	C-A	Hetero	UTR_5_PRIME
SBS	Chr7	18302483	G-C	Hetero	INTERGENIC
SBS	Chr7	21932263	G-T	Hetero	INTRON
SBS	Chr8	13995283	G-A	Hetero	INTERGENIC
SBS	Chr8	15759541	C-A	Hetero	INTRON
SBS	Chr8	19607082	T-C	Hetero	INTERGENIC
SBS	Chr9	1809492	C-T	Hetero	INTERGENIC
SBS	Chr9	10744095	G-T	Hetero	INTERGENIC
SBS	Chr9	15362118	T-A	Homo	INTERGENIC
SBS	Chr9	17686683	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g133800
SBS	Chr10	16469014	G-A	Hetero	INTERGENIC
SBS	Chr11	657247	T-A	Hetero	INTERGENIC
SBS	Chr11	17386278	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1666153	1666158	5
Deletion	Chr10	2246240	2246242	2
Deletion	Chr11	3990614	3990621	7
Deletion	Chr9	5668904	5668911	7
Deletion	Chr1	9490632	9490639	7
Deletion	Chr10	12114603	12114604	1
Deletion	Chr4	13882464	13882465	1
Deletion	Chr2	16616671	16616673	2
Deletion	Chr4	16738842	16738843	1
Deletion	Chr1	17426340	17426341	1
Deletion	Chr3	17527360	17527368	8
Deletion	Chr4	17750817	17750824	7
Deletion	Chr2	18603505	18603512	7
Deletion	Chr11	20360511	20360512	1	OsKitaake11g159300
Deletion	Chr2	20515101	20515102	1
Deletion	Chr4	22019932	22019938	6
Deletion	Chr4	25650599	25650602	3	OsKitaake04g178100
Deletion	Chr1	25714169	25714170	1	OsKitaake01g250000
Deletion	Chr1	28675876	28675879	3
Deletion	Chr4	33422336	33422341	5	OsKitaake04g274500
Deletion	Chr1	41571546	41571558	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	25711553	25908531
Inversion	Chr1	25711580	25908539

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes