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Mutant Information

Mutant Name	FN-183 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-183 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31851435 C-T Homo INTERGENIC
SBS Chr1 37622115 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g401200
SBS Chr2 1000963 A-T Homo INTERGENIC
SBS Chr2 1000964 G-T Homo INTERGENIC
SBS Chr2 15214162 A-G Hetero INTERGENIC
SBS Chr2 15792278 G-A Hetero INTRON
SBS Chr2 18555000 C-T Hetero INTERGENIC
SBS Chr2 20531162 C-T Hetero INTRON
SBS Chr2 36356354 A-T Hetero INTERGENIC
SBS Chr3 30390050 A-T Hetero INTERGENIC
SBS Chr3 32075067 A-G Hetero INTRON
SBS Chr4 4244832 C-T Homo INTERGENIC
SBS Chr4 23651207 T-A Homo INTERGENIC
SBS Chr5 9755320 G-A Homo INTERGENIC
SBS Chr5 16704518 A-T Hetero INTERGENIC
SBS Chr6 6342425 C-G Homo INTERGENIC
SBS Chr6 17254814 T-A Hetero INTERGENIC
SBS Chr7 3479972 G-A Hetero INTRON
SBS Chr7 5937980 A-G Hetero INTERGENIC
SBS Chr7 11951151 C-T Hetero INTERGENIC
SBS Chr7 12209359 T-C Hetero INTERGENIC
SBS Chr7 24752207 T-C Hetero INTERGENIC
SBS Chr8 6105252 C-G Hetero INTERGENIC
SBS Chr8 9904144 A-G Hetero INTERGENIC
SBS Chr8 12570123 C-T Hetero INTERGENIC
SBS Chr8 14720241 T-C Hetero INTERGENIC
SBS Chr9 62012 G-A Hetero INTERGENIC
SBS Chr9 1337664 G-A Homo INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr10 13396159 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g080200
SBS Chr10 22244532 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g181600
SBS Chr11 24337151 C-A Homo INTERGENIC
SBS Chr12 9860332 G-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1564001 1593000 28999 OsKitaake04g010800
Deletion Chr11 6697273 6697571 298
Deletion Chr4 8183282 8183283 1
Deletion Chr6 11752175 11752176 1 OsKitaake06g128200
Deletion Chr1 18305549 18305550 1
Deletion Chr10 20108401 20108403 2
Deletion Chr4 23287723 23287730 7
Deletion Chr5 23789893 23789900 7
Deletion Chr3 26140001 26422000 281999 6
Deletion Chr6 26818878 26818880 2
Deletion Chr1 33814419 33814421 2 OsKitaake01g347400
Deletion Chr3 35339037 35339038 1 OsKitaake03g387600
Deletion Chr4 36463062 36463065 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 6488756 6488760 3
Insertion Chr7 5616591 5616595 3
Insertion Chr9 15121259 15121262 2
Insertion Chr4 19538858 19538860 1
Insertion Chr4 31965684 31965686 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 4073402 4142611 OsKitaake03g058900
Inversion Chr3 26522114 27137981
Inversion Chr3 26522121 27138086

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 4073407 Chr2 30390687
Translocation Chr3 4642997 Chr2 30559781 OsKitaake03g067200
Translocation Chr3 27902687 Chr2 7099235 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31851435	C-T	Homo	INTERGENIC
SBS	Chr1	37622115	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g401200
SBS	Chr2	1000963	A-T	Homo	INTERGENIC
SBS	Chr2	1000964	G-T	Homo	INTERGENIC
SBS	Chr2	15214162	A-G	Hetero	INTERGENIC
SBS	Chr2	15792278	G-A	Hetero	INTRON
SBS	Chr2	18555000	C-T	Hetero	INTERGENIC
SBS	Chr2	20531162	C-T	Hetero	INTRON
SBS	Chr2	36356354	A-T	Hetero	INTERGENIC
SBS	Chr3	30390050	A-T	Hetero	INTERGENIC
SBS	Chr3	32075067	A-G	Hetero	INTRON
SBS	Chr4	4244832	C-T	Homo	INTERGENIC
SBS	Chr4	23651207	T-A	Homo	INTERGENIC
SBS	Chr5	9755320	G-A	Homo	INTERGENIC
SBS	Chr5	16704518	A-T	Hetero	INTERGENIC
SBS	Chr6	6342425	C-G	Homo	INTERGENIC
SBS	Chr6	17254814	T-A	Hetero	INTERGENIC
SBS	Chr7	3479972	G-A	Hetero	INTRON
SBS	Chr7	5937980	A-G	Hetero	INTERGENIC
SBS	Chr7	11951151	C-T	Hetero	INTERGENIC
SBS	Chr7	12209359	T-C	Hetero	INTERGENIC
SBS	Chr7	24752207	T-C	Hetero	INTERGENIC
SBS	Chr8	6105252	C-G	Hetero	INTERGENIC
SBS	Chr8	9904144	A-G	Hetero	INTERGENIC
SBS	Chr8	12570123	C-T	Hetero	INTERGENIC
SBS	Chr8	14720241	T-C	Hetero	INTERGENIC
SBS	Chr9	62012	G-A	Hetero	INTERGENIC
SBS	Chr9	1337664	G-A	Homo	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr10	13396159	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g080200
SBS	Chr10	22244532	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g181600
SBS	Chr11	24337151	C-A	Homo	INTERGENIC
SBS	Chr12	9860332	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1564001	1593000	28999	OsKitaake04g010800
Deletion	Chr11	6697273	6697571	298
Deletion	Chr4	8183282	8183283	1
Deletion	Chr6	11752175	11752176	1	OsKitaake06g128200
Deletion	Chr1	18305549	18305550	1
Deletion	Chr10	20108401	20108403	2
Deletion	Chr4	23287723	23287730	7
Deletion	Chr5	23789893	23789900	7
Deletion	Chr3	26140001	26422000	281999	6
Deletion	Chr6	26818878	26818880	2
Deletion	Chr1	33814419	33814421	2	OsKitaake01g347400
Deletion	Chr3	35339037	35339038	1	OsKitaake03g387600
Deletion	Chr4	36463062	36463065	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4073402	4142611	OsKitaake03g058900
Inversion	Chr3	26522114	27137981
Inversion	Chr3	26522121	27138086

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes