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Mutant Information

Mutant Name	FN-184 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-184 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24829185 G-A Homo INTERGENIC
SBS Chr1 34716611 C-T Hetero INTERGENIC
SBS Chr2 9650353 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 23282095 C-T Hetero INTERGENIC
SBS Chr3 1546838 G-A Homo INTERGENIC
SBS Chr3 5961293 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g085100
SBS Chr3 10440002 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g142800
SBS Chr3 10440003 G-T Homo SYNONYMOUS_CODING
SBS Chr3 20407541 G-T Homo INTERGENIC
SBS Chr3 22509319 G-A Hetero INTERGENIC
SBS Chr3 25386128 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g268000
SBS Chr3 34205225 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g369800
SBS Chr3 34205226 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 20768103 C-T Hetero INTERGENIC
SBS Chr4 27660179 A-G Homo INTERGENIC
SBS Chr6 7722098 C-T Hetero INTRON
SBS Chr6 10503049 C-G Hetero UTR_5_PRIME
SBS Chr6 11712173 A-T Hetero INTERGENIC
SBS Chr6 18526358 G-A Hetero INTERGENIC
SBS Chr6 21952564 T-A Hetero INTERGENIC
SBS Chr6 24139681 C-T Hetero INTRON
SBS Chr6 30776494 C-A Hetero INTERGENIC
SBS Chr7 8399479 A-T Hetero INTERGENIC
SBS Chr7 24092075 C-T Homo INTERGENIC
SBS Chr8 1523775 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 27303774 G-A Homo INTERGENIC
SBS Chr9 6123911 G-A Hetero INTERGENIC
SBS Chr9 6839063 A-T Hetero INTERGENIC
SBS Chr9 7869015 T-A Homo INTRON
SBS Chr10 760482 G-A Hetero INTERGENIC
SBS Chr10 7350060 C-T Hetero INTRON
SBS Chr10 9116993 T-C Hetero INTERGENIC
SBS Chr10 9278526 T-C Hetero INTERGENIC
SBS Chr10 12046504 G-A Hetero INTERGENIC
SBS Chr10 13399154 C-A Hetero INTERGENIC
SBS Chr11 14816407 C-T Hetero INTERGENIC
SBS Chr12 12752532 G-A Hetero INTERGENIC
SBS Chr12 20985159 G-A Hetero INTERGENIC
SBS Chr12 23734316 C-G Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2339277 2339290 13
Deletion Chr1 4325247 4325248 1 OsKitaake01g057600
Deletion Chr6 6466487 6466489 2
Deletion Chr12 8376153 8376154 1
Deletion Chr9 11218566 11218572 6
Deletion Chr1 11630044 11630056 12
Deletion Chr11 12641742 12641744 2
Deletion Chr12 13729001 13782000 52999 2
Deletion Chr10 14242116 14242118 2
Deletion Chr5 18013474 18013476 2 OsKitaake05g140100
Deletion Chr3 22461585 22461756 171
Deletion Chr5 22514136 22514138 2 OsKitaake05g184200
Deletion Chr4 26016121 26016125 4
Deletion Chr2 30622048 30622057 9

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 24026517 Chr5 24455726
Translocation Chr6 24027960 Chr5 24455619

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24829185	G-A	Homo	INTERGENIC
SBS	Chr1	34716611	C-T	Hetero	INTERGENIC
SBS	Chr2	9650353	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	23282095	C-T	Hetero	INTERGENIC
SBS	Chr3	1546838	G-A	Homo	INTERGENIC
SBS	Chr3	5961293	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g085100
SBS	Chr3	10440002	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g142800
SBS	Chr3	10440003	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	20407541	G-T	Homo	INTERGENIC
SBS	Chr3	22509319	G-A	Hetero	INTERGENIC
SBS	Chr3	25386128	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g268000
SBS	Chr3	34205225	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g369800
SBS	Chr3	34205226	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	20768103	C-T	Hetero	INTERGENIC
SBS	Chr4	27660179	A-G	Homo	INTERGENIC
SBS	Chr6	7722098	C-T	Hetero	INTRON
SBS	Chr6	10503049	C-G	Hetero	UTR_5_PRIME
SBS	Chr6	11712173	A-T	Hetero	INTERGENIC
SBS	Chr6	18526358	G-A	Hetero	INTERGENIC
SBS	Chr6	21952564	T-A	Hetero	INTERGENIC
SBS	Chr6	24139681	C-T	Hetero	INTRON
SBS	Chr6	30776494	C-A	Hetero	INTERGENIC
SBS	Chr7	8399479	A-T	Hetero	INTERGENIC
SBS	Chr7	24092075	C-T	Homo	INTERGENIC
SBS	Chr8	1523775	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	27303774	G-A	Homo	INTERGENIC
SBS	Chr9	6123911	G-A	Hetero	INTERGENIC
SBS	Chr9	6839063	A-T	Hetero	INTERGENIC
SBS	Chr9	7869015	T-A	Homo	INTRON
SBS	Chr10	760482	G-A	Hetero	INTERGENIC
SBS	Chr10	7350060	C-T	Hetero	INTRON
SBS	Chr10	9116993	T-C	Hetero	INTERGENIC
SBS	Chr10	9278526	T-C	Hetero	INTERGENIC
SBS	Chr10	12046504	G-A	Hetero	INTERGENIC
SBS	Chr10	13399154	C-A	Hetero	INTERGENIC
SBS	Chr11	14816407	C-T	Hetero	INTERGENIC
SBS	Chr12	12752532	G-A	Hetero	INTERGENIC
SBS	Chr12	20985159	G-A	Hetero	INTERGENIC
SBS	Chr12	23734316	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2339277	2339290	13
Deletion	Chr1	4325247	4325248	1	OsKitaake01g057600
Deletion	Chr6	6466487	6466489	2
Deletion	Chr12	8376153	8376154	1
Deletion	Chr9	11218566	11218572	6
Deletion	Chr1	11630044	11630056	12
Deletion	Chr11	12641742	12641744	2
Deletion	Chr12	13729001	13782000	52999	2
Deletion	Chr10	14242116	14242118	2
Deletion	Chr5	18013474	18013476	2	OsKitaake05g140100
Deletion	Chr3	22461585	22461756	171
Deletion	Chr5	22514136	22514138	2	OsKitaake05g184200
Deletion	Chr4	26016121	26016125	4
Deletion	Chr2	30622048	30622057	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	24026517	Chr5	24455726
Translocation	Chr6	24027960	Chr5	24455619

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes