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| Mutant Information |
|---|
| Mutant Name | FN-186 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-186 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14712094 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 4192485 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 11428070 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 11652902 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25460547 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33365730 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 5995545 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8100825 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26266916 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 7946957 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 5615424 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22605623 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28008629 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 11165392 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13692704 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 6148837 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 11561904 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17273612 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25216944 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g196700 |
| SBS | Chr9 | 2713711 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 10279704 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 13170937 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13170938 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 20616387 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 8255112 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 13926242 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 14552911 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16451210 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 18070086 | G-C | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1171091 | 1171092 | 1 | |
| Deletion | Chr11 | 2375977 | 2375979 | 2 | |
| Deletion | Chr7 | 3075334 | 3075336 | 2 | OsKitaake07g038600 |
| Deletion | Chr2 | 4063713 | 4063714 | 1 | |
| Deletion | Chr9 | 5031733 | 5031742 | 9 | |
| Deletion | Chr8 | 6148977 | 6148978 | 1 | |
| Deletion | Chr2 | 7406024 | 7406025 | 1 | OsKitaake02g098700 |
| Deletion | Chr6 | 10636524 | 10636624 | 100 | OsKitaake06g119501 |
| Deletion | Chr11 | 14556181 | 14556185 | 4 | |
| Deletion | Chr5 | 17229074 | 17229475 | 401 | |
| Deletion | Chr1 | 22471803 | 22471807 | 4 | |
| Deletion | Chr3 | 29305494 | 29305496 | 2 | |
| Deletion | Chr1 | 43985976 | 43985978 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 18946514 | 18946518 | 3 | |
| Insertion | Chr8 | 15565189 | 15565191 | 1 | |
| Insertion | Chr12 | 11697894 | 11697897 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 12018602 | 12987790 | |
| Inversion | Chr8 | 12018616 | 12987794 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 21500556 | Chr4 | 18617085 |