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Mutant Information

Mutant Name	FN-187 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-187 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22401712 G-A Hetero INTERGENIC
SBS Chr1 32007993 A-C Hetero INTERGENIC
SBS Chr1 37147426 C-T Hetero INTRON
SBS Chr1 37149650 C-T Hetero INTERGENIC
SBS Chr2 7795985 T-G Homo INTRON
SBS Chr2 15937427 G-A Hetero INTERGENIC
SBS Chr2 21887597 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 29015479 C-T Hetero INTERGENIC
SBS Chr2 32632148 G-A Hetero INTRON
SBS Chr2 34827792 T-C Homo INTRON
SBS Chr3 15683044 G-A Hetero INTERGENIC
SBS Chr3 16199725 C-T Hetero INTERGENIC
SBS Chr3 20029348 G-A Hetero INTERGENIC
SBS Chr3 23638441 G-A Hetero INTERGENIC
SBS Chr3 23638445 T-A Hetero INTERGENIC
SBS Chr3 31388399 T-A Homo INTRON
SBS Chr3 32017278 G-C Homo INTERGENIC
SBS Chr3 37067350 A-G Hetero INTERGENIC
SBS Chr4 15604874 A-G Hetero INTERGENIC
SBS Chr4 16242192 G-A Hetero INTERGENIC
SBS Chr4 25978766 G-A Hetero INTERGENIC
SBS Chr4 27476703 A-T Hetero INTERGENIC
SBS Chr4 27604269 G-A Hetero INTERGENIC
SBS Chr4 30253158 G-T Hetero INTERGENIC
SBS Chr5 13546180 G-C Hetero INTERGENIC
SBS Chr6 8997315 C-T Homo INTERGENIC
SBS Chr6 11537570 G-T Hetero INTERGENIC
SBS Chr6 20080399 G-A Homo INTERGENIC
SBS Chr6 31026910 C-T Hetero INTERGENIC
SBS Chr6 31026912 G-A Hetero INTERGENIC
SBS Chr8 14338017 C-T Hetero INTERGENIC
SBS Chr9 14607731 G-A Hetero INTERGENIC
SBS Chr10 2955238 C-G Hetero INTERGENIC
SBS Chr10 4465129 C-T Homo INTERGENIC
SBS Chr10 4721874 C-A Homo INTERGENIC
SBS Chr10 17987374 C-G Homo INTERGENIC
SBS Chr11 4359391 G-A Hetero INTERGENIC
SBS Chr11 12591266 G-A Hetero INTERGENIC
SBS Chr11 17642896 G-A Hetero INTRON
SBS Chr11 26841284 C-A Hetero INTERGENIC
SBS Chr12 12270558 G-T Hetero INTERGENIC
SBS Chr12 12832406 G-A Hetero INTERGENIC
SBS Chr12 23353034 C-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 91246 91247 1
Deletion Chr4 791709 791720 11
Deletion Chr10 2930001 2941000 10999
Deletion Chr12 3220988 3220992 4 OsKitaake12g046000
Deletion Chr2 3991001 4047000 55999 7
Deletion Chr12 4011011 4011014 3
Deletion Chr6 6226797 6226798 1
Deletion Chr9 7641682 7641683 1
Deletion Chr7 8683538 8683539 1
Deletion Chr8 18915501 18915503 2
Deletion Chr7 22954701 22954703 2
Deletion Chr12 23659508 23659510 2
Deletion Chr3 26603001 26632000 28999 2
Deletion Chr6 28139001 28185000 45999 10
Deletion Chr6 28188001 28399000 210999 37
Deletion Chr8 28919563 28919571 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13850924 13850926 1
Insertion Chr2 13851976 13851979 2
Insertion Chr2 18179771 18179773 1
Insertion Chr6 21477894 21477897 2
Insertion Chr7 12248929 12248931 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 36460939 36610878 OsKitaake03g404900
Inversion Chr3 36460943 36610881 OsKitaake03g404900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 5197522 Chr2 33564160
Translocation Chr4 5200026 Chr2 33564177

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22401712	G-A	Hetero	INTERGENIC
SBS	Chr1	32007993	A-C	Hetero	INTERGENIC
SBS	Chr1	37147426	C-T	Hetero	INTRON
SBS	Chr1	37149650	C-T	Hetero	INTERGENIC
SBS	Chr2	7795985	T-G	Homo	INTRON
SBS	Chr2	15937427	G-A	Hetero	INTERGENIC
SBS	Chr2	21887597	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	29015479	C-T	Hetero	INTERGENIC
SBS	Chr2	32632148	G-A	Hetero	INTRON
SBS	Chr2	34827792	T-C	Homo	INTRON
SBS	Chr3	15683044	G-A	Hetero	INTERGENIC
SBS	Chr3	16199725	C-T	Hetero	INTERGENIC
SBS	Chr3	20029348	G-A	Hetero	INTERGENIC
SBS	Chr3	23638441	G-A	Hetero	INTERGENIC
SBS	Chr3	23638445	T-A	Hetero	INTERGENIC
SBS	Chr3	31388399	T-A	Homo	INTRON
SBS	Chr3	32017278	G-C	Homo	INTERGENIC
SBS	Chr3	37067350	A-G	Hetero	INTERGENIC
SBS	Chr4	15604874	A-G	Hetero	INTERGENIC
SBS	Chr4	16242192	G-A	Hetero	INTERGENIC
SBS	Chr4	25978766	G-A	Hetero	INTERGENIC
SBS	Chr4	27476703	A-T	Hetero	INTERGENIC
SBS	Chr4	27604269	G-A	Hetero	INTERGENIC
SBS	Chr4	30253158	G-T	Hetero	INTERGENIC
SBS	Chr5	13546180	G-C	Hetero	INTERGENIC
SBS	Chr6	8997315	C-T	Homo	INTERGENIC
SBS	Chr6	11537570	G-T	Hetero	INTERGENIC
SBS	Chr6	20080399	G-A	Homo	INTERGENIC
SBS	Chr6	31026910	C-T	Hetero	INTERGENIC
SBS	Chr6	31026912	G-A	Hetero	INTERGENIC
SBS	Chr8	14338017	C-T	Hetero	INTERGENIC
SBS	Chr9	14607731	G-A	Hetero	INTERGENIC
SBS	Chr10	2955238	C-G	Hetero	INTERGENIC
SBS	Chr10	4465129	C-T	Homo	INTERGENIC
SBS	Chr10	4721874	C-A	Homo	INTERGENIC
SBS	Chr10	17987374	C-G	Homo	INTERGENIC
SBS	Chr11	4359391	G-A	Hetero	INTERGENIC
SBS	Chr11	12591266	G-A	Hetero	INTERGENIC
SBS	Chr11	17642896	G-A	Hetero	INTRON
SBS	Chr11	26841284	C-A	Hetero	INTERGENIC
SBS	Chr12	12270558	G-T	Hetero	INTERGENIC
SBS	Chr12	12832406	G-A	Hetero	INTERGENIC
SBS	Chr12	23353034	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	91246	91247	1
Deletion	Chr4	791709	791720	11
Deletion	Chr10	2930001	2941000	10999
Deletion	Chr12	3220988	3220992	4	OsKitaake12g046000
Deletion	Chr2	3991001	4047000	55999	7
Deletion	Chr12	4011011	4011014	3
Deletion	Chr6	6226797	6226798	1
Deletion	Chr9	7641682	7641683	1
Deletion	Chr7	8683538	8683539	1
Deletion	Chr8	18915501	18915503	2
Deletion	Chr7	22954701	22954703	2
Deletion	Chr12	23659508	23659510	2
Deletion	Chr3	26603001	26632000	28999	2
Deletion	Chr6	28139001	28185000	45999	10
Deletion	Chr6	28188001	28399000	210999	37
Deletion	Chr8	28919563	28919571	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	36460939	36610878	OsKitaake03g404900
Inversion	Chr3	36460943	36610881	OsKitaake03g404900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes