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Mutant Information

Mutant Name	FN-188 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-188 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26027887 C-T Homo INTRON
SBS Chr2 17089194 A-G Hetero INTERGENIC
SBS Chr2 27892753 A-G Hetero INTERGENIC
SBS Chr2 31545001 C-G Hetero INTERGENIC
SBS Chr3 15508455 G-A Homo INTRON
SBS Chr4 467144 A-C Homo SYNONYMOUS_CODING
SBS Chr4 3418152 A-G Homo INTERGENIC
SBS Chr4 14146667 C-T Hetero INTERGENIC
SBS Chr4 22340569 G-T Hetero INTERGENIC
SBS Chr5 1524294 C-T Hetero INTERGENIC
SBS Chr5 3481826 C-T Homo INTRON
SBS Chr5 13645797 G-A Hetero INTERGENIC
SBS Chr6 21733699 A-G Hetero SYNONYMOUS_STOP
SBS Chr6 29312479 C-T Hetero INTERGENIC
SBS Chr7 12044984 G-A Homo INTERGENIC
SBS Chr8 1371432 T-A Hetero INTERGENIC
SBS Chr8 7445854 A-G Hetero INTERGENIC
SBS Chr8 12877265 G-A Hetero INTERGENIC
SBS Chr8 20099372 A-T Hetero INTERGENIC
SBS Chr9 4092915 G-A Hetero INTERGENIC
SBS Chr9 19594873 T-C Hetero INTERGENIC
SBS Chr10 7663353 A-T Hetero INTERGENIC
SBS Chr10 23323910 T-C Hetero INTRON
SBS Chr11 3992713 A-T Homo STOP_GAINED OsKitaake11g054600
SBS Chr11 6868666 A-T Homo INTERGENIC
SBS Chr11 13354611 G-A Hetero INTERGENIC
SBS Chr11 21568593 G-T Hetero INTERGENIC
SBS Chr11 22314697 C-T Hetero INTRON
SBS Chr11 22720018 C-A Hetero INTRON
SBS Chr11 24539537 G-A Hetero INTERGENIC
SBS Chr12 2904543 G-T Hetero INTERGENIC
SBS Chr12 4380645 A-G Hetero INTERGENIC
SBS Chr12 10172270 G-A Hetero INTERGENIC
SBS Chr12 17497855 G-T Hetero INTERGENIC
SBS Chr12 21369102 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2541001 2608000 66999 3
Deletion Chr4 3625611 3625736 125
Deletion Chr11 5774654 5774657 3
Deletion Chr11 5890828 5890831 3
Deletion Chr9 7681598 7681708 110
Deletion Chr2 9553988 9553992 4
Deletion Chr2 12917183 12917184 1
Deletion Chr3 14867098 14867099 1
Deletion Chr11 16162396 16162400 4
Deletion Chr6 20098250 20098317 67
Deletion Chr11 23317095 23317097 2
Deletion Chr1 40058012 40058013 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 27485455 27485457 1
Insertion Chr4 31395712 31395715 2
Insertion Chr8 17352396 17352399 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5806423 6036508

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 774907 Chr5 7767870 OsKitaake05g077500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26027887	C-T	Homo	INTRON
SBS	Chr2	17089194	A-G	Hetero	INTERGENIC
SBS	Chr2	27892753	A-G	Hetero	INTERGENIC
SBS	Chr2	31545001	C-G	Hetero	INTERGENIC
SBS	Chr3	15508455	G-A	Homo	INTRON
SBS	Chr4	467144	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr4	3418152	A-G	Homo	INTERGENIC
SBS	Chr4	14146667	C-T	Hetero	INTERGENIC
SBS	Chr4	22340569	G-T	Hetero	INTERGENIC
SBS	Chr5	1524294	C-T	Hetero	INTERGENIC
SBS	Chr5	3481826	C-T	Homo	INTRON
SBS	Chr5	13645797	G-A	Hetero	INTERGENIC
SBS	Chr6	21733699	A-G	Hetero	SYNONYMOUS_STOP
SBS	Chr6	29312479	C-T	Hetero	INTERGENIC
SBS	Chr7	12044984	G-A	Homo	INTERGENIC
SBS	Chr8	1371432	T-A	Hetero	INTERGENIC
SBS	Chr8	7445854	A-G	Hetero	INTERGENIC
SBS	Chr8	12877265	G-A	Hetero	INTERGENIC
SBS	Chr8	20099372	A-T	Hetero	INTERGENIC
SBS	Chr9	4092915	G-A	Hetero	INTERGENIC
SBS	Chr9	19594873	T-C	Hetero	INTERGENIC
SBS	Chr10	7663353	A-T	Hetero	INTERGENIC
SBS	Chr10	23323910	T-C	Hetero	INTRON
SBS	Chr11	3992713	A-T	Homo	STOP_GAINED	OsKitaake11g054600
SBS	Chr11	6868666	A-T	Homo	INTERGENIC
SBS	Chr11	13354611	G-A	Hetero	INTERGENIC
SBS	Chr11	21568593	G-T	Hetero	INTERGENIC
SBS	Chr11	22314697	C-T	Hetero	INTRON
SBS	Chr11	22720018	C-A	Hetero	INTRON
SBS	Chr11	24539537	G-A	Hetero	INTERGENIC
SBS	Chr12	2904543	G-T	Hetero	INTERGENIC
SBS	Chr12	4380645	A-G	Hetero	INTERGENIC
SBS	Chr12	10172270	G-A	Hetero	INTERGENIC
SBS	Chr12	17497855	G-T	Hetero	INTERGENIC
SBS	Chr12	21369102	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2541001	2608000	66999	3
Deletion	Chr4	3625611	3625736	125
Deletion	Chr11	5774654	5774657	3
Deletion	Chr11	5890828	5890831	3
Deletion	Chr9	7681598	7681708	110
Deletion	Chr2	9553988	9553992	4
Deletion	Chr2	12917183	12917184	1
Deletion	Chr3	14867098	14867099	1
Deletion	Chr11	16162396	16162400	4
Deletion	Chr6	20098250	20098317	67
Deletion	Chr11	23317095	23317097	2
Deletion	Chr1	40058012	40058013	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5806423	6036508

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes