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Mutant Information

Mutant Name	FN-189 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-189 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7389984 C-T Hetero INTERGENIC
SBS Chr1 10868302 C-T Homo INTERGENIC
SBS Chr1 16870484 G-C Hetero INTERGENIC
SBS Chr1 21360658 G-A Hetero INTERGENIC
SBS Chr1 32672635 C-T Hetero INTERGENIC
SBS Chr1 35474748 A-G Hetero INTRON
SBS Chr1 39147551 C-T Hetero INTERGENIC
SBS Chr1 39147552 A-T Hetero INTERGENIC
SBS Chr2 28262223 A-T Hetero INTERGENIC
SBS Chr3 9172612 C-T Hetero INTERGENIC
SBS Chr3 26512278 G-A Hetero INTERGENIC
SBS Chr3 29295587 C-A Hetero INTERGENIC
SBS Chr4 1653636 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g011000
SBS Chr4 10212716 G-A Hetero INTERGENIC
SBS Chr4 17966158 C-T Hetero INTERGENIC
SBS Chr4 20737718 G-A Hetero INTERGENIC
SBS Chr4 22480604 T-C Homo INTRON
SBS Chr4 31518441 T-G Homo NON_SYNONYMOUS_CODING OsKitaake04g247900
SBS Chr4 33352541 G-A Homo UTR_5_PRIME
SBS Chr4 35738209 A-G Hetero INTRON
SBS Chr5 2236192 C-T Homo INTERGENIC
SBS Chr5 5059844 C-T Homo INTERGENIC
SBS Chr5 5565928 C-T Homo INTRON
SBS Chr5 23779956 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g208600
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr7 8827778 G-T Hetero INTERGENIC
SBS Chr7 10822536 C-G Hetero INTERGENIC
SBS Chr7 12720744 C-T Homo INTERGENIC
SBS Chr7 22612321 G-A Homo INTERGENIC
SBS Chr7 28154045 G-A Hetero INTERGENIC
SBS Chr8 5440381 A-G Hetero INTERGENIC
SBS Chr8 5829251 C-A Hetero INTERGENIC
SBS Chr8 7738229 T-C Homo INTERGENIC
SBS Chr8 11469870 A-G Hetero INTERGENIC
SBS Chr8 14976142 G-T Hetero INTERGENIC
SBS Chr8 18702668 T-C Hetero INTERGENIC
SBS Chr8 21959385 C-G Hetero INTERGENIC
SBS Chr9 5975376 C-A Hetero INTERGENIC
SBS Chr9 6363534 G-A Hetero INTERGENIC
SBS Chr9 16519135 A-T Homo INTERGENIC
SBS Chr9 19144911 A-G Hetero UTR_3_PRIME
SBS Chr9 20101412 A-T Hetero UTR_3_PRIME
SBS Chr9 22411158 G-A Homo INTERGENIC
SBS Chr10 21339829 T-A Hetero INTERGENIC
SBS Chr10 21964412 T-A Hetero INTERGENIC
SBS Chr11 3035250 A-G Hetero INTERGENIC
SBS Chr11 7241258 C-T Homo INTERGENIC
SBS Chr11 10615441 C-G Homo INTERGENIC
SBS Chr11 18537716 C-A Hetero INTERGENIC
SBS Chr12 989901 A-T Hetero INTERGENIC
SBS Chr12 5045879 C-T Hetero INTERGENIC
SBS Chr12 25511582 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1585420 1585423 3
Deletion Chr5 2106881 2106885 4
Deletion Chr1 2870860 2870862 2
Deletion Chr5 4552453 4552462 9
Deletion Chr11 4860465 4860473 8 OsKitaake11g062200
Deletion Chr6 11259063 11259064 1 OsKitaake06g124500
Deletion Chr9 15439120 15439122 2
Deletion Chr6 19735131 19735499 368
Deletion Chr12 19895628 19895631 3
Deletion Chr5 22815074 22815075 1
Deletion Chr4 31075454 31075462 8
Deletion Chr4 33172981 33172988 7 OsKitaake04g270200

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5944212 5944214 1
Insertion Chr8 15843248 15843251 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 25721101 25754764 2
Inversion Chr2 25721111 25754761 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7389984	C-T	Hetero	INTERGENIC
SBS	Chr1	10868302	C-T	Homo	INTERGENIC
SBS	Chr1	16870484	G-C	Hetero	INTERGENIC
SBS	Chr1	21360658	G-A	Hetero	INTERGENIC
SBS	Chr1	32672635	C-T	Hetero	INTERGENIC
SBS	Chr1	35474748	A-G	Hetero	INTRON
SBS	Chr1	39147551	C-T	Hetero	INTERGENIC
SBS	Chr1	39147552	A-T	Hetero	INTERGENIC
SBS	Chr2	28262223	A-T	Hetero	INTERGENIC
SBS	Chr3	9172612	C-T	Hetero	INTERGENIC
SBS	Chr3	26512278	G-A	Hetero	INTERGENIC
SBS	Chr3	29295587	C-A	Hetero	INTERGENIC
SBS	Chr4	1653636	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g011000
SBS	Chr4	10212716	G-A	Hetero	INTERGENIC
SBS	Chr4	17966158	C-T	Hetero	INTERGENIC
SBS	Chr4	20737718	G-A	Hetero	INTERGENIC
SBS	Chr4	22480604	T-C	Homo	INTRON
SBS	Chr4	31518441	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g247900
SBS	Chr4	33352541	G-A	Homo	UTR_5_PRIME
SBS	Chr4	35738209	A-G	Hetero	INTRON
SBS	Chr5	2236192	C-T	Homo	INTERGENIC
SBS	Chr5	5059844	C-T	Homo	INTERGENIC
SBS	Chr5	5565928	C-T	Homo	INTRON
SBS	Chr5	23779956	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g208600
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	8827778	G-T	Hetero	INTERGENIC
SBS	Chr7	10822536	C-G	Hetero	INTERGENIC
SBS	Chr7	12720744	C-T	Homo	INTERGENIC
SBS	Chr7	22612321	G-A	Homo	INTERGENIC
SBS	Chr7	28154045	G-A	Hetero	INTERGENIC
SBS	Chr8	5440381	A-G	Hetero	INTERGENIC
SBS	Chr8	5829251	C-A	Hetero	INTERGENIC
SBS	Chr8	7738229	T-C	Homo	INTERGENIC
SBS	Chr8	11469870	A-G	Hetero	INTERGENIC
SBS	Chr8	14976142	G-T	Hetero	INTERGENIC
SBS	Chr8	18702668	T-C	Hetero	INTERGENIC
SBS	Chr8	21959385	C-G	Hetero	INTERGENIC
SBS	Chr9	5975376	C-A	Hetero	INTERGENIC
SBS	Chr9	6363534	G-A	Hetero	INTERGENIC
SBS	Chr9	16519135	A-T	Homo	INTERGENIC
SBS	Chr9	19144911	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	20101412	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	22411158	G-A	Homo	INTERGENIC
SBS	Chr10	21339829	T-A	Hetero	INTERGENIC
SBS	Chr10	21964412	T-A	Hetero	INTERGENIC
SBS	Chr11	3035250	A-G	Hetero	INTERGENIC
SBS	Chr11	7241258	C-T	Homo	INTERGENIC
SBS	Chr11	10615441	C-G	Homo	INTERGENIC
SBS	Chr11	18537716	C-A	Hetero	INTERGENIC
SBS	Chr12	989901	A-T	Hetero	INTERGENIC
SBS	Chr12	5045879	C-T	Hetero	INTERGENIC
SBS	Chr12	25511582	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1585420	1585423	3
Deletion	Chr5	2106881	2106885	4
Deletion	Chr1	2870860	2870862	2
Deletion	Chr5	4552453	4552462	9
Deletion	Chr11	4860465	4860473	8	OsKitaake11g062200
Deletion	Chr6	11259063	11259064	1	OsKitaake06g124500
Deletion	Chr9	15439120	15439122	2
Deletion	Chr6	19735131	19735499	368
Deletion	Chr12	19895628	19895631	3
Deletion	Chr5	22815074	22815075	1
Deletion	Chr4	31075454	31075462	8
Deletion	Chr4	33172981	33172988	7	OsKitaake04g270200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	25721101	25754764	2
Inversion	Chr2	25721111	25754761	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes