Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-19 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-19 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10736597 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24994030 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 1124276 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 6457097 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1668929 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6901169 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 6901472 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 7499355 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9635950 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9639891 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14395330 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 2726307 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 16192953 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16192954 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 25100789 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18930652 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 18366557 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 5984800 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12200944 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g106000 |
| SBS | Chr8 | 26826763 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 103689 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 4651756 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7390995 | A-T | Hetero | INTRON | |
| SBS | Chr9 | 20235128 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 20990294 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 1138685 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1533318 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 1504362 | A-T | Homo | INTRON | |
| SBS | Chr12 | 26061696 | C-T | Homo | INTRON |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 20692 | 21044 | 352 | |
| Deletion | Chr6 | 107143 | 107144 | 1 | |
| Deletion | Chr12 | 2129791 | 2129794 | 3 | |
| Deletion | Chr9 | 4628911 | 4629084 | 173 | |
| Deletion | Chr1 | 4765928 | 4765936 | 8 | |
| Deletion | Chr1 | 5130658 | 5130661 | 3 | |
| Deletion | Chr2 | 8504988 | 8504989 | 1 | OsKitaake02g108050 |
| Deletion | Chr10 | 8675673 | 8675840 | 167 | |
| Deletion | Chr10 | 9708544 | 9708623 | 79 | |
| Deletion | Chr6 | 12619001 | 12658000 | 38999 | 3 |
| Deletion | Chr4 | 14135173 | 14135175 | 2 | |
| Deletion | Chr5 | 15426733 | 15426735 | 2 | OsKitaake05g118300 |
| Deletion | Chr2 | 18645983 | 18646071 | 88 | |
| Deletion | Chr6 | 19718060 | 19718068 | 8 | |
| Deletion | Chr6 | 21195120 | 21195135 | 15 | |
| Deletion | Chr11 | 22286360 | 22286373 | 13 | |
| Deletion | Chr12 | 24525890 | 24525892 | 2 | OsKitaake12g198200 |
| Deletion | Chr6 | 28191180 | 28191181 | 1 | |
| Deletion | Chr1 | 41077292 | 41077298 | 6 | OsKitaake01g448300 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 11929946 | 11929948 | 1 | |
| Insertion | Chr8 | 22826309 | 22826311 | 1 |