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| Mutant Information |
|---|
| Mutant Name | FN-190 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-190 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18873985 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2827574 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17241776 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 33776115 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 139341 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 8058450 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 14472593 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 5627046 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 5627047 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10380818 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 20036891 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 8759851 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10706932 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17764403 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 28565198 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 1945067 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 1945068 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6906688 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 24991760 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 25008427 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 26375982 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12604981 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17630509 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21890259 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 10117459 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 10933723 | T-G | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 513028 | 513030 | 2 | |
| Deletion | Chr12 | 2807771 | 2807774 | 3 | |
| Deletion | Chr9 | 4489775 | 4489783 | 8 | |
| Deletion | Chr10 | 5203300 | 5203311 | 11 | |
| Deletion | Chr10 | 5478404 | 5478419 | 15 | |
| Deletion | Chr12 | 6311507 | 6311509 | 2 | |
| Deletion | Chr6 | 7549896 | 7549947 | 51 | |
| Deletion | Chr5 | 19615432 | 19615536 | 104 | |
| Deletion | Chr4 | 25893293 | 25893294 | 1 | |
| Deletion | Chr1 | 31151009 | 31151010 | 1 | OsKitaake01g311000 |
| Deletion | Chr1 | 36158529 | 36158531 | 2 | OsKitaake01g383901 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 22066825 | 22066828 | 2 | |
| Insertion | Chr4 | 24756078 | 24756081 | 2 | |
| Insertion | Chr8 | 8874162 | 8874165 | 2 | |
| Insertion | Chr12 | 11713778 | 11713780 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 35536 | 544422 | OsKitaake04g004000 |
| Inversion | Chr4 | 35546 | 544439 | OsKitaake04g004000 |
| Inversion | Chr2 | 7332204 | 7360695 | |
| Inversion | Chr2 | 7332212 | 7360695 |