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Mutant Information

Mutant Name	FN-191 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-191 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5659305 T-A Hetero INTRON
SBS Chr1 5833239 G-A Hetero INTERGENIC
SBS Chr1 24294406 G-A Hetero INTERGENIC
SBS Chr1 26059340 C-T Hetero INTERGENIC
SBS Chr2 1356240 T-A Homo UTR_3_PRIME
SBS Chr2 2234408 T-C Hetero INTERGENIC
SBS Chr2 10878141 G-A Homo INTRON
SBS Chr2 10880335 G-C Homo INTRON
SBS Chr2 10883007 A-T Homo INTRON
SBS Chr2 10885276 G-T Homo INTRON
SBS Chr2 20718877 C-T Homo INTERGENIC
SBS Chr2 24869189 C-T Hetero INTERGENIC
SBS Chr2 27110222 C-T Homo INTERGENIC
SBS Chr2 27122687 G-A Homo INTERGENIC
SBS Chr2 27122688 G-A Homo INTERGENIC
SBS Chr2 27122689 G-A Homo INTERGENIC
SBS Chr3 14828510 A-G Hetero INTERGENIC
SBS Chr3 20705216 T-A Hetero INTERGENIC
SBS Chr3 21317312 G-A Hetero INTERGENIC
SBS Chr3 25011363 C-T Hetero INTERGENIC
SBS Chr3 31583238 G-C Homo INTERGENIC
SBS Chr4 1532674 G-C Hetero INTERGENIC
SBS Chr4 2649276 C-A Homo INTERGENIC
SBS Chr4 2653658 C-T Homo INTERGENIC
SBS Chr4 4825243 C-T Homo INTERGENIC
SBS Chr5 2799120 G-C Hetero UTR_3_PRIME
SBS Chr5 7180267 T-A Hetero INTRON
SBS Chr5 28543706 G-T Homo NON_SYNONYMOUS_CODING OsKitaake05g266600
SBS Chr6 1127546 C-T Hetero INTERGENIC
SBS Chr7 15628195 C-G Hetero INTERGENIC
SBS Chr9 15434487 G-A Hetero INTERGENIC
SBS Chr9 15434488 G-A Hetero INTERGENIC
SBS Chr9 21070242 T-A Hetero INTERGENIC
SBS Chr10 9219143 G-A Hetero INTERGENIC
SBS Chr10 12883965 T-A Homo INTERGENIC
SBS Chr10 18954819 C-T Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 12886815 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g114000
SBS Chr11 27739406 T-A Homo INTERGENIC
SBS Chr12 7452250 C-T Homo INTERGENIC
SBS Chr12 7452251 C-T Homo INTERGENIC
SBS Chr12 16908296 G-A Hetero INTERGENIC
SBS Chr12 22075679 C-T Hetero INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 216376 216377 1
Deletion Chr11 2010801 2010802 1 OsKitaake11g029000
Deletion Chr12 2163007 2163008 1
Deletion Chr6 3090598 3090613 15
Deletion Chr1 3216870 3216871 1
Deletion Chr10 6622165 6622169 4
Deletion Chr9 8043305 8043323 18
Deletion Chr9 15434304 15434306 2
Deletion Chr5 15819095 15819100 5
Deletion Chr7 17026681 17026683 2
Deletion Chr4 17444779 17444786 7
Deletion Chr4 18100919 18100921 2
Deletion Chr11 18578331 18578333 2
Deletion Chr12 18897916 18897917 1
Deletion Chr3 18954037 18954048 11
Deletion Chr11 20499576 20499577 1
Deletion Chr12 20982313 20982317 4
Deletion Chr3 22910786 22910793 7 OsKitaake03g247700
Deletion Chr2 23944316 23944336 20
Deletion Chr5 25291992 25291996 4
Deletion Chr12 26594465 26594466 1
Deletion Chr2 26640001 26695000 54999 7
Deletion Chr1 26721310 26721316 6
Deletion Chr3 26913404 26913406 2 OsKitaake03g180300
Deletion Chr1 29336491 29336493 2 OsKitaake01g286100
Deletion Chr1 31084114 31084115 1
Deletion Chr1 35025617 35025618 1
Deletion Chr1 38148844 38148846 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 5324673 5324675 1
Insertion Chr8 16004741 16004744 2
Insertion Chr9 17885776 17885779 2
Insertion Chr3 3129158 3129160 1
Insertion Chr9 2534004 2534006 1 OsKitaake09g013800
Insertion Chr9 19668113 19668116 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 18266107 18271912

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 11924200 Chr4 12494808
Translocation Chr5 11924508 Chr4 12494822

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5659305	T-A	Hetero	INTRON
SBS	Chr1	5833239	G-A	Hetero	INTERGENIC
SBS	Chr1	24294406	G-A	Hetero	INTERGENIC
SBS	Chr1	26059340	C-T	Hetero	INTERGENIC
SBS	Chr2	1356240	T-A	Homo	UTR_3_PRIME
SBS	Chr2	2234408	T-C	Hetero	INTERGENIC
SBS	Chr2	10878141	G-A	Homo	INTRON
SBS	Chr2	10880335	G-C	Homo	INTRON
SBS	Chr2	10883007	A-T	Homo	INTRON
SBS	Chr2	10885276	G-T	Homo	INTRON
SBS	Chr2	20718877	C-T	Homo	INTERGENIC
SBS	Chr2	24869189	C-T	Hetero	INTERGENIC
SBS	Chr2	27110222	C-T	Homo	INTERGENIC
SBS	Chr2	27122687	G-A	Homo	INTERGENIC
SBS	Chr2	27122688	G-A	Homo	INTERGENIC
SBS	Chr2	27122689	G-A	Homo	INTERGENIC
SBS	Chr3	14828510	A-G	Hetero	INTERGENIC
SBS	Chr3	20705216	T-A	Hetero	INTERGENIC
SBS	Chr3	21317312	G-A	Hetero	INTERGENIC
SBS	Chr3	25011363	C-T	Hetero	INTERGENIC
SBS	Chr3	31583238	G-C	Homo	INTERGENIC
SBS	Chr4	1532674	G-C	Hetero	INTERGENIC
SBS	Chr4	2649276	C-A	Homo	INTERGENIC
SBS	Chr4	2653658	C-T	Homo	INTERGENIC
SBS	Chr4	4825243	C-T	Homo	INTERGENIC
SBS	Chr5	2799120	G-C	Hetero	UTR_3_PRIME
SBS	Chr5	7180267	T-A	Hetero	INTRON
SBS	Chr5	28543706	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g266600
SBS	Chr6	1127546	C-T	Hetero	INTERGENIC
SBS	Chr7	15628195	C-G	Hetero	INTERGENIC
SBS	Chr9	15434487	G-A	Hetero	INTERGENIC
SBS	Chr9	15434488	G-A	Hetero	INTERGENIC
SBS	Chr9	21070242	T-A	Hetero	INTERGENIC
SBS	Chr10	9219143	G-A	Hetero	INTERGENIC
SBS	Chr10	12883965	T-A	Homo	INTERGENIC
SBS	Chr10	18954819	C-T	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	12886815	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g114000
SBS	Chr11	27739406	T-A	Homo	INTERGENIC
SBS	Chr12	7452250	C-T	Homo	INTERGENIC
SBS	Chr12	7452251	C-T	Homo	INTERGENIC
SBS	Chr12	16908296	G-A	Hetero	INTERGENIC
SBS	Chr12	22075679	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	216376	216377	1
Deletion	Chr11	2010801	2010802	1	OsKitaake11g029000
Deletion	Chr12	2163007	2163008	1
Deletion	Chr6	3090598	3090613	15
Deletion	Chr1	3216870	3216871	1
Deletion	Chr10	6622165	6622169	4
Deletion	Chr9	8043305	8043323	18
Deletion	Chr9	15434304	15434306	2
Deletion	Chr5	15819095	15819100	5
Deletion	Chr7	17026681	17026683	2
Deletion	Chr4	17444779	17444786	7
Deletion	Chr4	18100919	18100921	2
Deletion	Chr11	18578331	18578333	2
Deletion	Chr12	18897916	18897917	1
Deletion	Chr3	18954037	18954048	11
Deletion	Chr11	20499576	20499577	1
Deletion	Chr12	20982313	20982317	4
Deletion	Chr3	22910786	22910793	7	OsKitaake03g247700
Deletion	Chr2	23944316	23944336	20
Deletion	Chr5	25291992	25291996	4
Deletion	Chr12	26594465	26594466	1
Deletion	Chr2	26640001	26695000	54999	7
Deletion	Chr1	26721310	26721316	6
Deletion	Chr3	26913404	26913406	2	OsKitaake03g180300
Deletion	Chr1	29336491	29336493	2	OsKitaake01g286100
Deletion	Chr1	31084114	31084115	1
Deletion	Chr1	35025617	35025618	1
Deletion	Chr1	38148844	38148846	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	18266107	18271912

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes