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Mutant Information

Mutant Name	FN-192 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-192 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 685742 T-A Homo INTERGENIC
SBS Chr1 9819233 T-A Homo INTRON
SBS Chr1 20241024 G-A Hetero INTERGENIC
SBS Chr1 27949129 G-A Hetero INTERGENIC
SBS Chr1 29126583 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 29218393 A-T Hetero INTERGENIC
SBS Chr1 29486524 A-T Hetero INTERGENIC
SBS Chr1 30557982 G-T Hetero INTRON
SBS Chr1 37761308 A-C Hetero INTRON
SBS Chr2 1581000 A-G Hetero INTERGENIC
SBS Chr2 1581011 A-T Hetero INTERGENIC
SBS Chr2 3091106 A-T Hetero INTERGENIC
SBS Chr2 4835120 G-C Homo INTERGENIC
SBS Chr2 6555796 A-C Homo INTERGENIC
SBS Chr2 14811315 A-G Homo INTERGENIC
SBS Chr2 27192526 T-C Hetero INTRON
SBS Chr2 35182603 G-C Hetero INTERGENIC
SBS Chr3 12498866 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g168700
SBS Chr3 12498869 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g168700
SBS Chr3 13544052 C-T Hetero INTERGENIC
SBS Chr3 24276256 A-C Hetero INTERGENIC
SBS Chr3 33535621 T-C Hetero SPLICE_SITE_REGION
SBS Chr4 2800445 A-T Hetero INTERGENIC
SBS Chr4 17043158 T-A Hetero INTERGENIC
SBS Chr4 18196759 G-A Hetero INTERGENIC
SBS Chr4 23101104 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 26751495 T-C Hetero INTERGENIC
SBS Chr4 29348985 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g223500
SBS Chr4 32798830 C-G Hetero INTERGENIC
SBS Chr6 15124287 T-A Hetero INTERGENIC
SBS Chr6 16213981 A-G Hetero INTERGENIC
SBS Chr6 28876998 G-T Hetero INTERGENIC
SBS Chr7 1474693 G-C Homo UTR_3_PRIME
SBS Chr7 3420548 T-C Homo INTERGENIC
SBS Chr7 7508112 C-T Hetero INTERGENIC
SBS Chr7 19013647 A-G Homo INTERGENIC
SBS Chr7 27585481 T-A Hetero INTRON
SBS Chr8 1210749 G-A Hetero UTR_3_PRIME
SBS Chr8 16714729 G-A Homo INTERGENIC
SBS Chr10 4728338 A-C Hetero INTERGENIC
SBS Chr11 8678032 G-A Homo INTERGENIC
SBS Chr11 21823449 G-T Hetero INTERGENIC
SBS Chr12 4209352 C-T Hetero INTERGENIC
SBS Chr12 20534018 A-C Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 685383 685386 3
Deletion Chr5 2251060 2251062 2 OsKitaake05g025100
Deletion Chr8 4889806 4890174 368
Deletion Chr2 10987065 10987156 91
Deletion Chr3 28446936 28446937 1 OsKitaake03g294600

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 36107082 36107085 2
Insertion Chr7 11615900 11615903 2
Insertion Chr11 2812183 2812186 2
Insertion Chr5 11224004 11224006 1
Insertion Chr5 12402355 12402357 1
Insertion Chr6 16020336 16020338 1 OsKitaake06g154000

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 8254004 8623396
Inversion Chr9 8913205 9768222
Inversion Chr9 9563614 9768222

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8427446 Chr4 18859255

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	685742	T-A	Homo	INTERGENIC
SBS	Chr1	9819233	T-A	Homo	INTRON
SBS	Chr1	20241024	G-A	Hetero	INTERGENIC
SBS	Chr1	27949129	G-A	Hetero	INTERGENIC
SBS	Chr1	29126583	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	29218393	A-T	Hetero	INTERGENIC
SBS	Chr1	29486524	A-T	Hetero	INTERGENIC
SBS	Chr1	30557982	G-T	Hetero	INTRON
SBS	Chr1	37761308	A-C	Hetero	INTRON
SBS	Chr2	1581000	A-G	Hetero	INTERGENIC
SBS	Chr2	1581011	A-T	Hetero	INTERGENIC
SBS	Chr2	3091106	A-T	Hetero	INTERGENIC
SBS	Chr2	4835120	G-C	Homo	INTERGENIC
SBS	Chr2	6555796	A-C	Homo	INTERGENIC
SBS	Chr2	14811315	A-G	Homo	INTERGENIC
SBS	Chr2	27192526	T-C	Hetero	INTRON
SBS	Chr2	35182603	G-C	Hetero	INTERGENIC
SBS	Chr3	12498866	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g168700
SBS	Chr3	12498869	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g168700
SBS	Chr3	13544052	C-T	Hetero	INTERGENIC
SBS	Chr3	24276256	A-C	Hetero	INTERGENIC
SBS	Chr3	33535621	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr4	2800445	A-T	Hetero	INTERGENIC
SBS	Chr4	17043158	T-A	Hetero	INTERGENIC
SBS	Chr4	18196759	G-A	Hetero	INTERGENIC
SBS	Chr4	23101104	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	26751495	T-C	Hetero	INTERGENIC
SBS	Chr4	29348985	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g223500
SBS	Chr4	32798830	C-G	Hetero	INTERGENIC
SBS	Chr6	15124287	T-A	Hetero	INTERGENIC
SBS	Chr6	16213981	A-G	Hetero	INTERGENIC
SBS	Chr6	28876998	G-T	Hetero	INTERGENIC
SBS	Chr7	1474693	G-C	Homo	UTR_3_PRIME
SBS	Chr7	3420548	T-C	Homo	INTERGENIC
SBS	Chr7	7508112	C-T	Hetero	INTERGENIC
SBS	Chr7	19013647	A-G	Homo	INTERGENIC
SBS	Chr7	27585481	T-A	Hetero	INTRON
SBS	Chr8	1210749	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	16714729	G-A	Homo	INTERGENIC
SBS	Chr10	4728338	A-C	Hetero	INTERGENIC
SBS	Chr11	8678032	G-A	Homo	INTERGENIC
SBS	Chr11	21823449	G-T	Hetero	INTERGENIC
SBS	Chr12	4209352	C-T	Hetero	INTERGENIC
SBS	Chr12	20534018	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	685383	685386	3
Deletion	Chr5	2251060	2251062	2	OsKitaake05g025100
Deletion	Chr8	4889806	4890174	368
Deletion	Chr2	10987065	10987156	91
Deletion	Chr3	28446936	28446937	1	OsKitaake03g294600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	8254004	8623396
Inversion	Chr9	8913205	9768222
Inversion	Chr9	9563614	9768222

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes