Search Kitaake

Mutant Information

Mutant Name	FN-193 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-193 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28363677 C-A Homo INTERGENIC
SBS Chr1 34591573 T-A Hetero INTERGENIC
SBS Chr1 39080593 G-A Homo INTERGENIC
SBS Chr2 19475973 G-A Homo INTERGENIC
SBS Chr2 25114767 G-T Homo INTERGENIC
SBS Chr2 25114768 C-G Homo INTERGENIC
SBS Chr3 7872763 C-T Hetero INTERGENIC
SBS Chr3 20889405 A-G Hetero INTERGENIC
SBS Chr3 28427886 C-A Hetero INTERGENIC
SBS Chr4 12155019 C-A Homo INTERGENIC
SBS Chr4 22528215 G-A Hetero INTRON
SBS Chr4 24489309 A-G Homo INTERGENIC
SBS Chr4 31620635 G-T Hetero INTERGENIC
SBS Chr5 16755402 C-T Hetero INTERGENIC
SBS Chr5 17647260 T-A Homo INTERGENIC
SBS Chr5 22267946 A-G Hetero INTERGENIC
SBS Chr7 4647790 C-T Homo INTERGENIC
SBS Chr7 29442723 C-T Homo INTERGENIC
SBS Chr8 26639424 A-C Homo INTERGENIC
SBS Chr9 4135361 A-T Hetero INTERGENIC
SBS Chr9 4202258 C-T Hetero INTERGENIC
SBS Chr9 4604597 T-C Hetero INTERGENIC
SBS Chr9 7568471 G-A Hetero INTERGENIC
SBS Chr9 7568474 T-A Hetero INTERGENIC
SBS Chr10 48935 A-G Hetero INTERGENIC
SBS Chr10 4776337 G-T Homo INTERGENIC
SBS Chr10 7883541 T-C Homo INTERGENIC
SBS Chr10 11233285 G-A Hetero INTERGENIC
SBS Chr10 14489173 T-G Hetero UTR_3_PRIME
SBS Chr11 20094533 C-T Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 88990 88991 1
Deletion Chr7 954001 1080000 125999 19
Deletion Chr7 1157001 1223000 65999 17
Deletion Chr3 2062913 2062914 1
Deletion Chr6 12392001 12414000 21999 OsKitaake06g132400
Deletion Chr7 13195467 13195469 2
Deletion Chr2 13466482 13466484 2
Deletion Chr12 13768938 13769022 84
Deletion Chr5 16743591 16743682 91
Deletion Chr3 18677968 18677971 3
Deletion Chr8 26633357 26633364 7
Deletion Chr8 29275503 29275504 1
Deletion Chr3 37428821 37428911 90
Deletion Chr1 38738346 38738396 50

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29416178 29416181 2
Insertion Chr4 34866231 34866236 4
Insertion Chr7 20096788 20096791 2
Insertion Chr12 19601138 19601141 2
Insertion Chr12 23723859 23723863 3
Insertion Chr3 8671974 8671978 3
Insertion Chr5 30231639 30231641 1
Insertion Chr5 30252938 30252940 1
Insertion Chr11 12355960 12355962 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1076520 1228971 OsKitaake07g017300
Inversion Chr9 4497459 4604748 OsKitaake09g025500
Inversion Chr9 4604749 5381407 OsKitaake09g030800

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5388674 Chr7 7768485
Translocation Chr8 5388689 Chr7 7768726
Translocation Chr10 8628896 Chr6 14760507

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28363677	C-A	Homo	INTERGENIC
SBS	Chr1	34591573	T-A	Hetero	INTERGENIC
SBS	Chr1	39080593	G-A	Homo	INTERGENIC
SBS	Chr2	19475973	G-A	Homo	INTERGENIC
SBS	Chr2	25114767	G-T	Homo	INTERGENIC
SBS	Chr2	25114768	C-G	Homo	INTERGENIC
SBS	Chr3	7872763	C-T	Hetero	INTERGENIC
SBS	Chr3	20889405	A-G	Hetero	INTERGENIC
SBS	Chr3	28427886	C-A	Hetero	INTERGENIC
SBS	Chr4	12155019	C-A	Homo	INTERGENIC
SBS	Chr4	22528215	G-A	Hetero	INTRON
SBS	Chr4	24489309	A-G	Homo	INTERGENIC
SBS	Chr4	31620635	G-T	Hetero	INTERGENIC
SBS	Chr5	16755402	C-T	Hetero	INTERGENIC
SBS	Chr5	17647260	T-A	Homo	INTERGENIC
SBS	Chr5	22267946	A-G	Hetero	INTERGENIC
SBS	Chr7	4647790	C-T	Homo	INTERGENIC
SBS	Chr7	29442723	C-T	Homo	INTERGENIC
SBS	Chr8	26639424	A-C	Homo	INTERGENIC
SBS	Chr9	4135361	A-T	Hetero	INTERGENIC
SBS	Chr9	4202258	C-T	Hetero	INTERGENIC
SBS	Chr9	4604597	T-C	Hetero	INTERGENIC
SBS	Chr9	7568471	G-A	Hetero	INTERGENIC
SBS	Chr9	7568474	T-A	Hetero	INTERGENIC
SBS	Chr10	48935	A-G	Hetero	INTERGENIC
SBS	Chr10	4776337	G-T	Homo	INTERGENIC
SBS	Chr10	7883541	T-C	Homo	INTERGENIC
SBS	Chr10	11233285	G-A	Hetero	INTERGENIC
SBS	Chr10	14489173	T-G	Hetero	UTR_3_PRIME
SBS	Chr11	20094533	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	88990	88991	1
Deletion	Chr7	954001	1080000	125999	19
Deletion	Chr7	1157001	1223000	65999	17
Deletion	Chr3	2062913	2062914	1
Deletion	Chr6	12392001	12414000	21999	OsKitaake06g132400
Deletion	Chr7	13195467	13195469	2
Deletion	Chr2	13466482	13466484	2
Deletion	Chr12	13768938	13769022	84
Deletion	Chr5	16743591	16743682	91
Deletion	Chr3	18677968	18677971	3
Deletion	Chr8	26633357	26633364	7
Deletion	Chr8	29275503	29275504	1
Deletion	Chr3	37428821	37428911	90
Deletion	Chr1	38738346	38738396	50

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1076520	1228971	OsKitaake07g017300
Inversion	Chr9	4497459	4604748	OsKitaake09g025500
Inversion	Chr9	4604749	5381407	OsKitaake09g030800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes