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Mutant Information

Mutant Name	FN-194 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-194 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9743760 A-G Hetero INTERGENIC
SBS Chr1 10484760 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g130900
SBS Chr1 17237347 T-C Hetero INTERGENIC
SBS Chr4 29016278 G-A Homo INTERGENIC
SBS Chr5 16346518 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 329170 C-T Hetero INTERGENIC
SBS Chr6 22660925 T-C Hetero INTERGENIC
SBS Chr7 13198906 C-T Hetero INTERGENIC
SBS Chr7 21147678 G-A Homo INTERGENIC
SBS Chr8 3455711 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g038700
SBS Chr9 5677322 A-C Hetero INTERGENIC
SBS Chr9 9925527 C-T Hetero INTERGENIC
SBS Chr9 10748415 A-G Hetero INTRON
SBS Chr9 14692304 A-C Hetero INTERGENIC
SBS Chr10 6156439 C-T Hetero INTERGENIC
SBS Chr10 8816369 T-A Hetero INTERGENIC
SBS Chr10 11650540 A-G Hetero UTR_3_PRIME
SBS Chr10 11819259 G-A Hetero INTERGENIC
SBS Chr10 19457604 A-C Hetero INTRON
SBS Chr10 19522248 G-A Hetero INTRON
SBS Chr11 3153975 C-A Hetero INTERGENIC
SBS Chr11 14133262 G-T Hetero INTRON
SBS Chr11 16811136 A-T Hetero INTERGENIC
SBS Chr11 18525821 T-C Hetero INTERGENIC
SBS Chr12 11944135 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5432526 5432528 2
Deletion Chr10 9805245 9805476 231
Deletion Chr10 10299603 10299604 1
Deletion Chr5 11446001 11562000 115999 OsKitaake05g095600
Deletion Chr5 12028676 12028678 2
Deletion Chr12 13179001 13198000 18999 8
Deletion Chr3 14110833 14110837 4
Deletion Chr6 14299581 14299872 291
Deletion Chr6 18099425 18099551 126
Deletion Chr2 19738293 19738295 2 OsKitaake02g193000
Deletion Chr2 21014964 21014966 2
Deletion Chr5 23388999 23389000 1
Deletion Chr7 24348899 24348900 1
Deletion Chr1 26799293 26799294 1
Deletion Chr5 30208052 30208406 354

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11626166 11626168 1
Insertion Chr2 35328984 35328987 2
Insertion Chr4 9487228 9487230 1
Insertion Chr4 9496147 9496149 1
Insertion Chr5 5375575 5375620 44

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 4412511 4536696 OsKitaake05g051200
Inversion Chr5 4412522 4536708 OsKitaake05g051200
Inversion Chr4 29277415 29405764 OsKitaake04g224700
Inversion Chr4 29277430 29405767 OsKitaake04g224700

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 26023660 Chr6 4285404 OsKitaake06g059200
Translocation Chr12 26024282 Chr6 4285394 OsKitaake06g059200
Translocation Chr7 27490573 Chr1 29042429 OsKitaake01g281901
Translocation Chr7 27490574 Chr1 29043423 OsKitaake01g281901

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9743760	A-G	Hetero	INTERGENIC
SBS	Chr1	10484760	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g130900
SBS	Chr1	17237347	T-C	Hetero	INTERGENIC
SBS	Chr4	29016278	G-A	Homo	INTERGENIC
SBS	Chr5	16346518	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	329170	C-T	Hetero	INTERGENIC
SBS	Chr6	22660925	T-C	Hetero	INTERGENIC
SBS	Chr7	13198906	C-T	Hetero	INTERGENIC
SBS	Chr7	21147678	G-A	Homo	INTERGENIC
SBS	Chr8	3455711	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g038700
SBS	Chr9	5677322	A-C	Hetero	INTERGENIC
SBS	Chr9	9925527	C-T	Hetero	INTERGENIC
SBS	Chr9	10748415	A-G	Hetero	INTRON
SBS	Chr9	14692304	A-C	Hetero	INTERGENIC
SBS	Chr10	6156439	C-T	Hetero	INTERGENIC
SBS	Chr10	8816369	T-A	Hetero	INTERGENIC
SBS	Chr10	11650540	A-G	Hetero	UTR_3_PRIME
SBS	Chr10	11819259	G-A	Hetero	INTERGENIC
SBS	Chr10	19457604	A-C	Hetero	INTRON
SBS	Chr10	19522248	G-A	Hetero	INTRON
SBS	Chr11	3153975	C-A	Hetero	INTERGENIC
SBS	Chr11	14133262	G-T	Hetero	INTRON
SBS	Chr11	16811136	A-T	Hetero	INTERGENIC
SBS	Chr11	18525821	T-C	Hetero	INTERGENIC
SBS	Chr12	11944135	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5432526	5432528	2
Deletion	Chr10	9805245	9805476	231
Deletion	Chr10	10299603	10299604	1
Deletion	Chr5	11446001	11562000	115999	OsKitaake05g095600
Deletion	Chr5	12028676	12028678	2
Deletion	Chr12	13179001	13198000	18999	8
Deletion	Chr3	14110833	14110837	4
Deletion	Chr6	14299581	14299872	291
Deletion	Chr6	18099425	18099551	126
Deletion	Chr2	19738293	19738295	2	OsKitaake02g193000
Deletion	Chr2	21014964	21014966	2
Deletion	Chr5	23388999	23389000	1
Deletion	Chr7	24348899	24348900	1
Deletion	Chr1	26799293	26799294	1
Deletion	Chr5	30208052	30208406	354

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4412511	4536696	OsKitaake05g051200
Inversion	Chr5	4412522	4536708	OsKitaake05g051200
Inversion	Chr4	29277415	29405764	OsKitaake04g224700
Inversion	Chr4	29277430	29405767	OsKitaake04g224700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes