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| Mutant Information |
|---|
| Mutant Name | FN-195 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-195 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2349672 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g029000 |
| SBS | Chr1 | 13530555 | G-C | Hetero | INTRON | |
| SBS | Chr1 | 19197478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 32122675 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 37410738 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31862396 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 4008363 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 17493177 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21255546 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26242676 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27187966 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7496347 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7496348 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18305081 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 21279686 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g117800 |
| SBS | Chr4 | 22930467 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 31426269 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13281373 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 6073752 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g080000 |
| SBS | Chr7 | 22219767 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 5463707 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g059600 |
| SBS | Chr9 | 13480521 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 15958994 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g113800 |
| SBS | Chr10 | 482527 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 1485474 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr11 | 9579765 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11464966 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13439797 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 16427727 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 21294265 | T-A | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 11133497 | 11133498 | 1 | |
| Deletion | Chr3 | 18179709 | 18179711 | 2 | |
| Deletion | Chr11 | 20052415 | 20052417 | 2 | OsKitaake11g157328 |
| Deletion | Chr9 | 21351748 | 21351758 | 10 | |
| Deletion | Chr10 | 23210001 | 23243000 | 32999 | 5 |
| Deletion | Chr7 | 25406982 | 25407303 | 321 | |
| Deletion | Chr2 | 32314523 | 32314530 | 7 | |
| Deletion | Chr1 | 37661001 | 37667000 | 5999 | OsKitaake01g401900 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 36444610 | 36444614 | 3 | |
| Insertion | Chr7 | 6517685 | 6517688 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 16962181 | 17081380 | OsKitaake03g211366 |
| Inversion | Chr3 | 16962188 | 17081388 | OsKitaake03g211366 |