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Mutant Information

Mutant Name	FN-196 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-196 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 978466 G-A Hetero INTRON
SBS Chr1 8644385 A-C Hetero INTERGENIC
SBS Chr1 16143482 C-T Hetero INTERGENIC
SBS Chr1 18419601 A-G Homo INTERGENIC
SBS Chr1 34236111 C-T Homo INTERGENIC
SBS Chr2 11462602 G-A Homo INTERGENIC
SBS Chr2 36187079 A-G Hetero INTERGENIC
SBS Chr3 4144843 G-A Hetero INTERGENIC
SBS Chr3 16030225 C-T Hetero INTRON
SBS Chr4 8267041 G-C Hetero INTERGENIC
SBS Chr5 12285186 G-A Homo INTERGENIC
SBS Chr7 14336989 G-T Homo INTERGENIC
SBS Chr9 12535802 A-T Hetero INTERGENIC
SBS Chr9 18564206 C-T Hetero INTERGENIC
SBS Chr10 12730626 G-T Homo INTERGENIC
SBS Chr10 17676588 G-A Hetero INTERGENIC
SBS Chr11 25661418 T-C Homo INTERGENIC
SBS Chr12 4645999 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g061400
SBS Chr12 17892372 T-G Hetero INTERGENIC
SBS Chr12 18814579 C-T Hetero INTERGENIC
SBS Chr12 19009488 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4869659 4869669 10
Deletion Chr4 5441273 5441275 2
Deletion Chr6 8787237 8787243 6
Deletion Chr8 10806835 10806909 74
Deletion Chr6 10979383 10979390 7
Deletion Chr8 17690457 17690458 1
Deletion Chr1 21917955 21917958 3
Deletion Chr4 32537661 32537665 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 13865666 13865669 2
Insertion Chr3 22492942 22492944 1
Insertion Chr8 1411838 1411840 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 29851885 30191353
Inversion Chr1 29856707 30191363

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 17539413 Chr2 25288890
Translocation Chr11 19070637 Chr1 11399766 OsKitaake01g139300
Translocation Chr11 19070652 Chr1 11398198 OsKitaake01g139300
Translocation Chr9 21197722 Chr8 5509292 2
Translocation Chr9 21197732 Chr5 1182884 OsKitaake09g183600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	978466	G-A	Hetero	INTRON
SBS	Chr1	8644385	A-C	Hetero	INTERGENIC
SBS	Chr1	16143482	C-T	Hetero	INTERGENIC
SBS	Chr1	18419601	A-G	Homo	INTERGENIC
SBS	Chr1	34236111	C-T	Homo	INTERGENIC
SBS	Chr2	11462602	G-A	Homo	INTERGENIC
SBS	Chr2	36187079	A-G	Hetero	INTERGENIC
SBS	Chr3	4144843	G-A	Hetero	INTERGENIC
SBS	Chr3	16030225	C-T	Hetero	INTRON
SBS	Chr4	8267041	G-C	Hetero	INTERGENIC
SBS	Chr5	12285186	G-A	Homo	INTERGENIC
SBS	Chr7	14336989	G-T	Homo	INTERGENIC
SBS	Chr9	12535802	A-T	Hetero	INTERGENIC
SBS	Chr9	18564206	C-T	Hetero	INTERGENIC
SBS	Chr10	12730626	G-T	Homo	INTERGENIC
SBS	Chr10	17676588	G-A	Hetero	INTERGENIC
SBS	Chr11	25661418	T-C	Homo	INTERGENIC
SBS	Chr12	4645999	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g061400
SBS	Chr12	17892372	T-G	Hetero	INTERGENIC
SBS	Chr12	18814579	C-T	Hetero	INTERGENIC
SBS	Chr12	19009488	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4869659	4869669	10
Deletion	Chr4	5441273	5441275	2
Deletion	Chr6	8787237	8787243	6
Deletion	Chr8	10806835	10806909	74
Deletion	Chr6	10979383	10979390	7
Deletion	Chr8	17690457	17690458	1
Deletion	Chr1	21917955	21917958	3
Deletion	Chr4	32537661	32537665	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	29851885	30191353
Inversion	Chr1	29856707	30191363

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes