Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-197 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-197 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1940473 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 3790161 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 30955313 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35252592 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 12904235 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18407727 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25620412 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 2911299 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4808307 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4556018 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 5154041 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18279373 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 36388227 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 1248114 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5362046 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 7235376 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 12958362 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23402840 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 23971659 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g212400 |
| SBS | Chr6 | 25842932 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28283568 | T-A | Hetero | UTR_3_PRIME | |
| SBS | Chr7 | 12121595 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 12486521 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16873007 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 15881892 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8260720 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 19673404 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 1804018 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 12805014 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25599785 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3509299 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 16856612 | A-G | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 709001 | 738000 | 28999 | |
| Deletion | Chr4 | 2163001 | 2687000 | 523999 | 14 |
| Deletion | Chr12 | 11657933 | 11658552 | 619 | |
| Deletion | Chr6 | 16201138 | 16201142 | 4 | |
| Deletion | Chr3 | 18227200 | 18227201 | 1 | OsKitaake03g222200 |
| Deletion | Chr2 | 18538041 | 18538042 | 1 | |
| Deletion | Chr7 | 19353717 | 19353721 | 4 | |
| Deletion | Chr6 | 22074913 | 22074914 | 1 | |
| Deletion | Chr4 | 22430001 | 22698000 | 267999 | 37 |
| Deletion | Chr11 | 26958780 | 26959206 | 426 | |
| Deletion | Chr2 | 32615343 | 32615344 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 36887839 | 36887841 | 1 | |
| Insertion | Chr2 | 10324700 | 10324702 | 1 | |
| Insertion | Chr5 | 30239995 | 30240003 | 7 | |
| Insertion | Chr11 | 25162046 | 25162048 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 1192902 | 1262430 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 3608182 | Chr3 | 32189588 | OsKitaake05g043600 |