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Mutant Information

Mutant Name	FN-198 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-198 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14986 T-G Hetero INTERGENIC
SBS Chr1 1010315 C-T Hetero INTERGENIC
SBS Chr1 3488833 A-G Hetero INTRON
SBS Chr1 7878927 G-A Hetero INTERGENIC
SBS Chr1 7953029 A-T Hetero INTERGENIC
SBS Chr1 7953030 C-T Hetero INTERGENIC
SBS Chr1 14574606 G-T Hetero INTRON
SBS Chr1 27149423 A-T Hetero INTERGENIC
SBS Chr1 39480854 C-T Homo INTRON
SBS Chr2 4948954 G-A Hetero INTERGENIC
SBS Chr2 15215204 G-A Hetero INTERGENIC
SBS Chr2 32541102 G-A Hetero INTERGENIC
SBS Chr2 36276763 C-G Hetero INTERGENIC
SBS Chr3 1783016 G-T Hetero INTERGENIC
SBS Chr3 10148367 A-G Hetero INTERGENIC
SBS Chr3 13543402 G-A Hetero INTERGENIC
SBS Chr3 15789067 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g202100
SBS Chr3 21312884 C-T Hetero INTERGENIC
SBS Chr3 24825977 A-C Hetero INTERGENIC
SBS Chr3 30032050 G-A Homo INTERGENIC
SBS Chr3 30032051 C-A Homo INTERGENIC
SBS Chr3 36518969 A-C Hetero INTRON
SBS Chr3 36530306 A-G Hetero INTERGENIC
SBS Chr4 5062269 A-G Hetero INTERGENIC
SBS Chr4 10117223 G-A Hetero INTERGENIC
SBS Chr4 28332265 A-G Hetero INTERGENIC
SBS Chr5 1872573 G-A Homo INTERGENIC
SBS Chr5 10788483 G-A Hetero INTERGENIC
SBS Chr5 24054281 C-A Homo INTRON
SBS Chr7 12460330 C-T Homo INTERGENIC
SBS Chr7 15911987 G-T Homo INTERGENIC
SBS Chr7 16548131 G-A Homo INTERGENIC
SBS Chr8 23392480 C-T Hetero INTRON
SBS Chr9 24127 G-A Hetero INTERGENIC
SBS Chr9 2647210 C-T Hetero INTERGENIC
SBS Chr9 3303532 C-T Hetero INTERGENIC
SBS Chr10 13552688 G-A Hetero INTERGENIC
SBS Chr11 27795119 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2356561 2356565 4
Deletion Chr2 7685867 7685870 3
Deletion Chr11 15373518 15373520 2
Deletion Chr9 18446498 18446500 2
Deletion Chr12 18925001 18947000 21999 2
Deletion Chr2 19466166 19466171 5
Deletion Chr2 21467495 21467496 1
Deletion Chr2 23161713 23161714 1
Deletion Chr2 23891330 23891332 2
Deletion Chr5 24053001 24180000 126999 21
Deletion Chr2 24131381 24131382 1
Deletion Chr7 25986221 25986222 1 OsKitaake07g237800
Deletion Chr5 30258420 30258421 1
Deletion Chr1 31274724 31274726 2
Deletion Chr3 36105001 36114000 8999 OsKitaake03g399100

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 25622972 25622976 3
Insertion Chr1 15144081 15144085 3 OsKitaake01g144000
Insertion Chr2 28849671 28849673 1
Insertion Chr5 30224202 30224204 1
Insertion Chr8 22823116 22823118 1
Insertion Chr8 22826309 22826311 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 14637000 14718556
Inversion Chr5 24057113 24192837 OsKitaake05g215200
Inversion Chr5 24180105 24193161 2
Inversion Chr3 35581183 36138617 2
Inversion Chr3 36119735 36138615 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 11858764 Chr1 38998269 2
Translocation Chr9 11858839 Chr1 38998060 OsKitaake09g075600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14986	T-G	Hetero	INTERGENIC
SBS	Chr1	1010315	C-T	Hetero	INTERGENIC
SBS	Chr1	3488833	A-G	Hetero	INTRON
SBS	Chr1	7878927	G-A	Hetero	INTERGENIC
SBS	Chr1	7953029	A-T	Hetero	INTERGENIC
SBS	Chr1	7953030	C-T	Hetero	INTERGENIC
SBS	Chr1	14574606	G-T	Hetero	INTRON
SBS	Chr1	27149423	A-T	Hetero	INTERGENIC
SBS	Chr1	39480854	C-T	Homo	INTRON
SBS	Chr2	4948954	G-A	Hetero	INTERGENIC
SBS	Chr2	15215204	G-A	Hetero	INTERGENIC
SBS	Chr2	32541102	G-A	Hetero	INTERGENIC
SBS	Chr2	36276763	C-G	Hetero	INTERGENIC
SBS	Chr3	1783016	G-T	Hetero	INTERGENIC
SBS	Chr3	10148367	A-G	Hetero	INTERGENIC
SBS	Chr3	13543402	G-A	Hetero	INTERGENIC
SBS	Chr3	15789067	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g202100
SBS	Chr3	21312884	C-T	Hetero	INTERGENIC
SBS	Chr3	24825977	A-C	Hetero	INTERGENIC
SBS	Chr3	30032050	G-A	Homo	INTERGENIC
SBS	Chr3	30032051	C-A	Homo	INTERGENIC
SBS	Chr3	36518969	A-C	Hetero	INTRON
SBS	Chr3	36530306	A-G	Hetero	INTERGENIC
SBS	Chr4	5062269	A-G	Hetero	INTERGENIC
SBS	Chr4	10117223	G-A	Hetero	INTERGENIC
SBS	Chr4	28332265	A-G	Hetero	INTERGENIC
SBS	Chr5	1872573	G-A	Homo	INTERGENIC
SBS	Chr5	10788483	G-A	Hetero	INTERGENIC
SBS	Chr5	24054281	C-A	Homo	INTRON
SBS	Chr7	12460330	C-T	Homo	INTERGENIC
SBS	Chr7	15911987	G-T	Homo	INTERGENIC
SBS	Chr7	16548131	G-A	Homo	INTERGENIC
SBS	Chr8	23392480	C-T	Hetero	INTRON
SBS	Chr9	24127	G-A	Hetero	INTERGENIC
SBS	Chr9	2647210	C-T	Hetero	INTERGENIC
SBS	Chr9	3303532	C-T	Hetero	INTERGENIC
SBS	Chr10	13552688	G-A	Hetero	INTERGENIC
SBS	Chr11	27795119	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2356561	2356565	4
Deletion	Chr2	7685867	7685870	3
Deletion	Chr11	15373518	15373520	2
Deletion	Chr9	18446498	18446500	2
Deletion	Chr12	18925001	18947000	21999	2
Deletion	Chr2	19466166	19466171	5
Deletion	Chr2	21467495	21467496	1
Deletion	Chr2	23161713	23161714	1
Deletion	Chr2	23891330	23891332	2
Deletion	Chr5	24053001	24180000	126999	21
Deletion	Chr2	24131381	24131382	1
Deletion	Chr7	25986221	25986222	1	OsKitaake07g237800
Deletion	Chr5	30258420	30258421	1
Deletion	Chr1	31274724	31274726	2
Deletion	Chr3	36105001	36114000	8999	OsKitaake03g399100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14637000	14718556
Inversion	Chr5	24057113	24192837	OsKitaake05g215200
Inversion	Chr5	24180105	24193161	2
Inversion	Chr3	35581183	36138617	2
Inversion	Chr3	36119735	36138615	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes