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Mutant Information

Mutant Name	FN-199 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-199 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14968840 T-C Hetero INTERGENIC
SBS Chr3 4592997 C-T Hetero INTERGENIC
SBS Chr3 11472984 T-C Homo INTERGENIC
SBS Chr3 15057979 C-A Hetero INTERGENIC
SBS Chr3 15057980 C-A Hetero INTERGENIC
SBS Chr4 586634 T-C Hetero UTR_3_PRIME
SBS Chr4 13600717 G-T Hetero INTERGENIC
SBS Chr4 13600720 G-T Hetero INTERGENIC
SBS Chr4 17037068 C-A Hetero INTERGENIC
SBS Chr4 17325742 T-G Hetero INTRON
SBS Chr4 23926190 C-T Hetero INTERGENIC
SBS Chr4 29751251 T-A Hetero INTERGENIC
SBS Chr4 35321171 T-G Hetero INTERGENIC
SBS Chr4 35671823 A-G Hetero INTRON
SBS Chr4 36231664 T-G Hetero INTERGENIC
SBS Chr5 10809394 C-G Hetero INTERGENIC
SBS Chr5 14047504 A-G Hetero INTERGENIC
SBS Chr5 26735119 T-A Hetero INTRON
SBS Chr5 26735120 A-C Hetero INTRON
SBS Chr6 2674957 G-A Hetero INTERGENIC
SBS Chr6 12089006 C-T Homo INTERGENIC
SBS Chr6 19206343 G-C Homo INTERGENIC
SBS Chr7 16359170 A-T Homo INTERGENIC
SBS Chr7 22459123 A-T Homo INTERGENIC
SBS Chr8 2937855 T-C Hetero INTRON
SBS Chr8 13793065 G-T Hetero INTERGENIC
SBS Chr8 19201265 C-T Hetero INTERGENIC
SBS Chr8 23352747 T-A Hetero INTERGENIC
SBS Chr8 25068141 A-T Hetero INTERGENIC
SBS Chr9 8713494 C-T Homo INTERGENIC
SBS Chr9 11083209 G-A Homo INTRON
SBS Chr9 11083210 C-A Homo INTRON
SBS Chr9 21674867 C-T Hetero UTR_3_PRIME
SBS Chr10 430709 C-T Hetero INTERGENIC
SBS Chr10 12070703 C-T Hetero INTRON
SBS Chr10 19378279 C-A Hetero INTERGENIC
SBS Chr10 20754491 T-G Hetero INTERGENIC
SBS Chr11 11596139 G-A Homo INTERGENIC
SBS Chr12 9566835 T-C Hetero INTERGENIC
SBS Chr12 11107604 G-C Hetero INTERGENIC
SBS Chr12 21118164 A-G Homo INTERGENIC
SBS Chr12 21361376 A-G Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 5619265 5619270 5
Deletion Chr7 8259425 8259469 44
Deletion Chr12 8725775 8725785 10
Deletion Chr7 10268465 10268467 2
Deletion Chr10 11157251 11157253 2
Deletion Chr1 11224001 11233000 8999 2
Deletion Chr4 13171382 13171383 1
Deletion Chr11 14104560 14104562 2 OsKitaake11g117800
Deletion Chr6 16208274 16208339 65 OsKitaake06g155500
Deletion Chr7 24471910 24471913 3
Deletion Chr7 25433010 25433018 8
Deletion Chr11 29602053 29602060 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30188951 30188954 2
Insertion Chr12 16125353 16125355 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 15216847 15280600
Inversion Chr8 15216863 15280716

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 17640948 Chr1 31329124 2
Translocation Chr4 17640963 Chr1 31327791 OsKitaake04g088300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14968840	T-C	Hetero	INTERGENIC
SBS	Chr3	4592997	C-T	Hetero	INTERGENIC
SBS	Chr3	11472984	T-C	Homo	INTERGENIC
SBS	Chr3	15057979	C-A	Hetero	INTERGENIC
SBS	Chr3	15057980	C-A	Hetero	INTERGENIC
SBS	Chr4	586634	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	13600717	G-T	Hetero	INTERGENIC
SBS	Chr4	13600720	G-T	Hetero	INTERGENIC
SBS	Chr4	17037068	C-A	Hetero	INTERGENIC
SBS	Chr4	17325742	T-G	Hetero	INTRON
SBS	Chr4	23926190	C-T	Hetero	INTERGENIC
SBS	Chr4	29751251	T-A	Hetero	INTERGENIC
SBS	Chr4	35321171	T-G	Hetero	INTERGENIC
SBS	Chr4	35671823	A-G	Hetero	INTRON
SBS	Chr4	36231664	T-G	Hetero	INTERGENIC
SBS	Chr5	10809394	C-G	Hetero	INTERGENIC
SBS	Chr5	14047504	A-G	Hetero	INTERGENIC
SBS	Chr5	26735119	T-A	Hetero	INTRON
SBS	Chr5	26735120	A-C	Hetero	INTRON
SBS	Chr6	2674957	G-A	Hetero	INTERGENIC
SBS	Chr6	12089006	C-T	Homo	INTERGENIC
SBS	Chr6	19206343	G-C	Homo	INTERGENIC
SBS	Chr7	16359170	A-T	Homo	INTERGENIC
SBS	Chr7	22459123	A-T	Homo	INTERGENIC
SBS	Chr8	2937855	T-C	Hetero	INTRON
SBS	Chr8	13793065	G-T	Hetero	INTERGENIC
SBS	Chr8	19201265	C-T	Hetero	INTERGENIC
SBS	Chr8	23352747	T-A	Hetero	INTERGENIC
SBS	Chr8	25068141	A-T	Hetero	INTERGENIC
SBS	Chr9	8713494	C-T	Homo	INTERGENIC
SBS	Chr9	11083209	G-A	Homo	INTRON
SBS	Chr9	11083210	C-A	Homo	INTRON
SBS	Chr9	21674867	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	430709	C-T	Hetero	INTERGENIC
SBS	Chr10	12070703	C-T	Hetero	INTRON
SBS	Chr10	19378279	C-A	Hetero	INTERGENIC
SBS	Chr10	20754491	T-G	Hetero	INTERGENIC
SBS	Chr11	11596139	G-A	Homo	INTERGENIC
SBS	Chr12	9566835	T-C	Hetero	INTERGENIC
SBS	Chr12	11107604	G-C	Hetero	INTERGENIC
SBS	Chr12	21118164	A-G	Homo	INTERGENIC
SBS	Chr12	21361376	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	5619265	5619270	5
Deletion	Chr7	8259425	8259469	44
Deletion	Chr12	8725775	8725785	10
Deletion	Chr7	10268465	10268467	2
Deletion	Chr10	11157251	11157253	2
Deletion	Chr1	11224001	11233000	8999	2
Deletion	Chr4	13171382	13171383	1
Deletion	Chr11	14104560	14104562	2	OsKitaake11g117800
Deletion	Chr6	16208274	16208339	65	OsKitaake06g155500
Deletion	Chr7	24471910	24471913	3
Deletion	Chr7	25433010	25433018	8
Deletion	Chr11	29602053	29602060	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	15216847	15280600
Inversion	Chr8	15216863	15280716

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes