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| Mutant Information |
|---|
| Mutant Name | FN-20 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-20 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1064521 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16221442 | G-C | Homo | INTERGENIC | |
| SBS | Chr1 | 40250154 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr2 | 5594922 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 11544320 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 25667913 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 27132690 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 35505042 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 777623 | G-A | Homo | STOP_GAINED | OsKitaake03g012200 |
| SBS | Chr3 | 11260217 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 23086065 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 15780290 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20829238 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24571059 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g160800 |
| SBS | Chr5 | 12636330 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 14104549 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20953646 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24302816 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 16082687 | C-A | Hetero | INTRON | |
| SBS | Chr7 | 29065997 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 1977298 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g022700 |
| SBS | Chr8 | 19084267 | C-A | Hetero | STOP_GAINED | OsKitaake08g140900 |
| SBS | Chr8 | 22250038 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28299657 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1443189 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17095483 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 19032520 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g136100 |
| SBS | Chr11 | 28746082 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 4218840 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15088448 | A-G | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 8947129 | 8947130 | 1 | |
| Deletion | Chr3 | 10587118 | 10587139 | 21 | |
| Deletion | Chr11 | 12451923 | 12451930 | 7 | |
| Deletion | Chr10 | 12765483 | 12765485 | 2 | |
| Deletion | Chr7 | 13721001 | 13729000 | 7999 | |
| Deletion | Chr6 | 19626555 | 19626559 | 4 | |
| Deletion | Chr7 | 19690955 | 19690959 | 4 | |
| Deletion | Chr8 | 20522237 | 20522239 | 2 | |
| Deletion | Chr1 | 22721018 | 22721020 | 2 | |
| Deletion | Chr5 | 23268781 | 23268783 | 2 | |
| Deletion | Chr1 | 34515483 | 34515496 | 13 | OsKitaake01g361400 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 10645227 | 10645230 | 2 | |
| Insertion | Chr1 | 25903566 | 25903569 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 2325613 | 3249998 | OsKitaake10g019200 |
| Inversion | Chr10 | 2325619 | 3249995 | OsKitaake10g019200 |
| Inversion | Chr7 | 17989754 | 18003550 | OsKitaake07g144700 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 3319400 | Chr2 | 6773927 | OsKitaake02g092300 |
| Translocation | Chr7 | 3320382 | Chr2 | 6773917 | 2 |