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Mutant Information

Mutant Name	FN-200 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-200 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1115912 C-A Hetero UTR_5_PRIME
SBS Chr1 3094252 C-T Hetero INTERGENIC
SBS Chr1 8073647 T-A Hetero INTERGENIC
SBS Chr1 18130033 T-C Hetero INTERGENIC
SBS Chr1 22743387 A-G Homo INTERGENIC
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr1 29735033 A-T Homo INTERGENIC
SBS Chr1 43406404 T-G Hetero INTRON
SBS Chr2 444314 A-G Homo INTRON
SBS Chr2 15727746 T-C Hetero UTR_3_PRIME
SBS Chr2 18884421 A-C Homo INTERGENIC
SBS Chr2 18888714 C-T Homo INTRON
SBS Chr2 18888715 G-T Homo INTRON
SBS Chr3 8324674 G-C Hetero INTERGENIC
SBS Chr3 18572867 A-T Homo INTERGENIC
SBS Chr3 19728406 C-A Homo INTERGENIC
SBS Chr3 26568209 G-A Hetero INTERGENIC
SBS Chr3 26719096 C-T Hetero INTERGENIC
SBS Chr4 5148114 A-G Hetero INTERGENIC
SBS Chr4 16471006 C-T Hetero INTERGENIC
SBS Chr4 18204492 G-A Hetero INTERGENIC
SBS Chr4 25664205 G-A Hetero INTERGENIC
SBS Chr4 26343374 A-T Hetero INTERGENIC
SBS Chr5 3806947 T-C Hetero INTRON
SBS Chr5 9173011 T-G Homo INTERGENIC
SBS Chr5 28202318 C-T Hetero INTERGENIC
SBS Chr6 1658523 C-T Hetero INTERGENIC
SBS Chr6 1686327 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 7924872 T-C Hetero INTERGENIC
SBS Chr6 23975457 G-A Homo INTERGENIC
SBS Chr7 5673312 C-A Hetero INTERGENIC
SBS Chr8 8774945 G-A Homo INTERGENIC
SBS Chr8 21676001 G-A Hetero INTERGENIC
SBS Chr8 28627825 C-T Hetero INTERGENIC
SBS Chr11 6666311 C-T Hetero INTERGENIC
SBS Chr11 22594360 C-T Hetero INTERGENIC
SBS Chr11 24098167 T-G Hetero INTERGENIC
SBS Chr12 7916442 G-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1721206 1721208 2 OsKitaake11g023100
Deletion Chr10 1905001 1945000 39999 5
Deletion Chr12 2983699 2983704 5
Deletion Chr1 7575761 7575822 61
Deletion Chr2 12713001 12731000 17999 OsKitaake02g142200
Deletion Chr7 13839531 13839732 201
Deletion Chr12 15068365 15068366 1
Deletion Chr4 15864378 15864380 2 OsKitaake04g077550
Deletion Chr1 17283622 17284286 664
Deletion Chr10 18686981 18686983 2
Deletion Chr11 20365001 20394000 28999 OsKitaake11g159400
Deletion Chr4 21040687 21040688 1 OsKitaake04g115500
Deletion Chr7 22306412 22306413 1
Deletion Chr3 28944102 28944104 2
Deletion Chr1 29492387 29492388 1 OsKitaake01g289000

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4119283 4119286 2
Insertion Chr7 11037064 11037067 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 11575550 11577678 2
Inversion Chr2 11575575 11868079 OsKitaake02g133700
Inversion Chr2 11867506 12712353 OsKitaake02g135500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 13930944 Chr10 8624321

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1115912	C-A	Hetero	UTR_5_PRIME
SBS	Chr1	3094252	C-T	Hetero	INTERGENIC
SBS	Chr1	8073647	T-A	Hetero	INTERGENIC
SBS	Chr1	18130033	T-C	Hetero	INTERGENIC
SBS	Chr1	22743387	A-G	Homo	INTERGENIC
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr1	29735033	A-T	Homo	INTERGENIC
SBS	Chr1	43406404	T-G	Hetero	INTRON
SBS	Chr2	444314	A-G	Homo	INTRON
SBS	Chr2	15727746	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	18884421	A-C	Homo	INTERGENIC
SBS	Chr2	18888714	C-T	Homo	INTRON
SBS	Chr2	18888715	G-T	Homo	INTRON
SBS	Chr3	8324674	G-C	Hetero	INTERGENIC
SBS	Chr3	18572867	A-T	Homo	INTERGENIC
SBS	Chr3	19728406	C-A	Homo	INTERGENIC
SBS	Chr3	26568209	G-A	Hetero	INTERGENIC
SBS	Chr3	26719096	C-T	Hetero	INTERGENIC
SBS	Chr4	5148114	A-G	Hetero	INTERGENIC
SBS	Chr4	16471006	C-T	Hetero	INTERGENIC
SBS	Chr4	18204492	G-A	Hetero	INTERGENIC
SBS	Chr4	25664205	G-A	Hetero	INTERGENIC
SBS	Chr4	26343374	A-T	Hetero	INTERGENIC
SBS	Chr5	3806947	T-C	Hetero	INTRON
SBS	Chr5	9173011	T-G	Homo	INTERGENIC
SBS	Chr5	28202318	C-T	Hetero	INTERGENIC
SBS	Chr6	1658523	C-T	Hetero	INTERGENIC
SBS	Chr6	1686327	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	7924872	T-C	Hetero	INTERGENIC
SBS	Chr6	23975457	G-A	Homo	INTERGENIC
SBS	Chr7	5673312	C-A	Hetero	INTERGENIC
SBS	Chr8	8774945	G-A	Homo	INTERGENIC
SBS	Chr8	21676001	G-A	Hetero	INTERGENIC
SBS	Chr8	28627825	C-T	Hetero	INTERGENIC
SBS	Chr11	6666311	C-T	Hetero	INTERGENIC
SBS	Chr11	22594360	C-T	Hetero	INTERGENIC
SBS	Chr11	24098167	T-G	Hetero	INTERGENIC
SBS	Chr12	7916442	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1721206	1721208	2	OsKitaake11g023100
Deletion	Chr10	1905001	1945000	39999	5
Deletion	Chr12	2983699	2983704	5
Deletion	Chr1	7575761	7575822	61
Deletion	Chr2	12713001	12731000	17999	OsKitaake02g142200
Deletion	Chr7	13839531	13839732	201
Deletion	Chr12	15068365	15068366	1
Deletion	Chr4	15864378	15864380	2	OsKitaake04g077550
Deletion	Chr1	17283622	17284286	664
Deletion	Chr10	18686981	18686983	2
Deletion	Chr11	20365001	20394000	28999	OsKitaake11g159400
Deletion	Chr4	21040687	21040688	1	OsKitaake04g115500
Deletion	Chr7	22306412	22306413	1
Deletion	Chr3	28944102	28944104	2
Deletion	Chr1	29492387	29492388	1	OsKitaake01g289000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11575550	11577678	2
Inversion	Chr2	11575575	11868079	OsKitaake02g133700
Inversion	Chr2	11867506	12712353	OsKitaake02g135500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes