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| Mutant Information |
|---|
| Mutant Name | FN-201 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-201 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 685049 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 31969673 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34591022 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 39840704 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4115476 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 17697541 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 20737435 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 30616629 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 5799209 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 22164054 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1103183 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 15645218 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 19879992 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10817961 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 24579868 | G-T | Homo | INTRON | |
| SBS | Chr6 | 27839330 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6439599 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 14844795 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 13410433 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18648567 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22661543 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 14619329 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16270358 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 1056842 | G-T | Homo | INTRON | |
| SBS | Chr12 | 7859186 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25002038 | A-G | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 86160 | 86161 | 1 | |
| Deletion | Chr8 | 1440863 | 1440865 | 2 | |
| Deletion | Chr11 | 2430265 | 2430386 | 121 | OsKitaake11g035200 |
| Deletion | Chr1 | 2491268 | 2491271 | 3 | OsKitaake01g031700 |
| Deletion | Chr1 | 4059377 | 4059497 | 120 | |
| Deletion | Chr9 | 8380656 | 8380658 | 2 | |
| Deletion | Chr6 | 10494268 | 10494270 | 2 | |
| Deletion | Chr8 | 10963804 | 10963805 | 1 | |
| Deletion | Chr12 | 11657364 | 11657519 | 155 | |
| Deletion | Chr8 | 12807026 | 12807027 | 1 | |
| Deletion | Chr12 | 13851664 | 13851666 | 2 | |
| Deletion | Chr4 | 14135173 | 14135175 | 2 | |
| Deletion | Chr7 | 15669982 | 15669984 | 2 | |
| Deletion | Chr9 | 15898320 | 15898321 | 1 | OsKitaake09g113400 |
| Deletion | Chr12 | 21358274 | 21358490 | 216 | |
| Deletion | Chr4 | 27027316 | 27027317 | 1 | OsKitaake04g196500 |
| Deletion | Chr3 | 37625001 | 37747000 | 121999 | 20 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 22175582 | 22175605 | 22 | OsKitaake03g241635  |
| Insertion | Chr9 | 2738311 | 2738313 | 1 | |
| Insertion | Chr12 | 20146354 | 20146356 | 1 | OsKitaake12g154800 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 1806860 | 2041115 | |
| Inversion | Chr7 | 1806864 | 1846532 | OsKitaake07g025500 |
| Inversion | Chr3 | 2344207 | 2346030 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 1844521 | Chr1 | 3577205 | OsKitaake07g025500 |
| Translocation | Chr7 | 2231688 | Chr2 | 25786137 | |
| Translocation | Chr12 | 10040200 | Chr7 | 1843893 | OsKitaake07g025500 |
| Translocation | Chr12 | 10044988 | Chr1 | 3577184 | OsKitaake12g095000 |