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Mutant Information

Mutant Name	FN-202 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-202 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2110471 C-A Homo INTRON
SBS Chr1 4877209 C-G Hetero INTERGENIC
SBS Chr1 19198603 C-T Hetero INTERGENIC
SBS Chr2 1040801 A-G Hetero INTRON
SBS Chr2 2846156 C-T Homo INTERGENIC
SBS Chr2 3671755 C-T Homo INTERGENIC
SBS Chr2 4535722 C-T Homo INTRON
SBS Chr2 20558377 G-A Homo INTERGENIC
SBS Chr3 2739057 C-T Homo INTERGENIC
SBS Chr3 2739058 C-T Homo INTERGENIC
SBS Chr3 4029567 G-A Hetero INTERGENIC
SBS Chr3 10830692 C-T Hetero INTERGENIC
SBS Chr3 26218179 G-A Hetero INTERGENIC
SBS Chr3 33695952 T-C Homo INTERGENIC
SBS Chr4 13410338 C-T Hetero INTERGENIC
SBS Chr4 15989395 G-A Hetero INTERGENIC
SBS Chr4 18253498 G-T Hetero INTERGENIC
SBS Chr4 21922123 C-G Homo NON_SYNONYMOUS_CODING OsKitaake04g127000
SBS Chr4 24261384 G-T Hetero INTERGENIC
SBS Chr4 24272630 C-A Hetero INTERGENIC
SBS Chr4 32676213 C-T Hetero INTERGENIC
SBS Chr4 32712369 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g263500
SBS Chr4 34207717 A-C Hetero INTRON
SBS Chr5 5356134 C-A Homo INTERGENIC
SBS Chr5 6065740 C-T Hetero INTERGENIC
SBS Chr5 6508349 A-G Homo INTERGENIC
SBS Chr5 17452334 A-T Homo INTERGENIC
SBS Chr5 20154823 G-T Homo UTR_3_PRIME
SBS Chr5 24238333 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 5636092 C-A Homo INTERGENIC
SBS Chr6 21343278 G-A Homo INTERGENIC
SBS Chr7 3238060 G-A Hetero INTERGENIC
SBS Chr7 17804611 G-A Hetero INTERGENIC
SBS Chr7 23083659 G-A Hetero INTERGENIC
SBS Chr8 4461865 T-C Hetero INTERGENIC
SBS Chr8 10736023 C-T Hetero INTRON
SBS Chr9 7261613 C-T Hetero INTERGENIC
SBS Chr9 7776310 T-C Hetero INTERGENIC
SBS Chr9 9692588 A-C Hetero INTRON
SBS Chr10 1132086 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g008600
SBS Chr11 11904679 T-C Hetero INTRON
SBS Chr11 15130231 G-C Hetero INTERGENIC
SBS Chr11 24885116 T-C Hetero INTERGENIC
SBS Chr11 28749247 T-A Hetero INTERGENIC
SBS Chr12 1730613 G-A Hetero UTR_5_PRIME
SBS Chr12 15478353 G-A Hetero INTERGENIC
SBS Chr12 18614100 A-G Hetero INTRON
SBS Chr12 23353889 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 25444338 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1377298 1377307 9
Deletion Chr4 1472749 1472750 1
Deletion Chr4 1503085 1503086 1
Deletion Chr4 3408042 3408055 13
Deletion Chr6 9107852 9107857 5
Deletion Chr6 11532610 11532614 4
Deletion Chr11 12113139 12113145 6
Deletion Chr1 13428091 13428099 8
Deletion Chr9 13510891 13510909 18
Deletion Chr6 13703154 13703157 3
Deletion Chr5 14155546 14155547 1
Deletion Chr11 17620587 17620591 4
Deletion Chr7 17746219 17746220 1
Deletion Chr4 17779915 17779916 1
Deletion Chr4 20799620 20799623 3
Deletion Chr8 22898431 22898438 7
Deletion Chr5 25148846 25148851 5
Deletion Chr3 37057072 37057073 1 OsKitaake03g414100
Deletion Chr3 37177053 37177067 14
Deletion Chr1 38422816 38422823 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9711996 9712003 6
Insertion Chr3 19104152 19104154 1
Insertion Chr4 15545415 15545417 1
Insertion Chr6 23361167 23361169 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 29427492 29525010 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 18310953 Chr1 36289629

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2110471	C-A	Homo	INTRON
SBS	Chr1	4877209	C-G	Hetero	INTERGENIC
SBS	Chr1	19198603	C-T	Hetero	INTERGENIC
SBS	Chr2	1040801	A-G	Hetero	INTRON
SBS	Chr2	2846156	C-T	Homo	INTERGENIC
SBS	Chr2	3671755	C-T	Homo	INTERGENIC
SBS	Chr2	4535722	C-T	Homo	INTRON
SBS	Chr2	20558377	G-A	Homo	INTERGENIC
SBS	Chr3	2739057	C-T	Homo	INTERGENIC
SBS	Chr3	2739058	C-T	Homo	INTERGENIC
SBS	Chr3	4029567	G-A	Hetero	INTERGENIC
SBS	Chr3	10830692	C-T	Hetero	INTERGENIC
SBS	Chr3	26218179	G-A	Hetero	INTERGENIC
SBS	Chr3	33695952	T-C	Homo	INTERGENIC
SBS	Chr4	13410338	C-T	Hetero	INTERGENIC
SBS	Chr4	15989395	G-A	Hetero	INTERGENIC
SBS	Chr4	18253498	G-T	Hetero	INTERGENIC
SBS	Chr4	21922123	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g127000
SBS	Chr4	24261384	G-T	Hetero	INTERGENIC
SBS	Chr4	24272630	C-A	Hetero	INTERGENIC
SBS	Chr4	32676213	C-T	Hetero	INTERGENIC
SBS	Chr4	32712369	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g263500
SBS	Chr4	34207717	A-C	Hetero	INTRON
SBS	Chr5	5356134	C-A	Homo	INTERGENIC
SBS	Chr5	6065740	C-T	Hetero	INTERGENIC
SBS	Chr5	6508349	A-G	Homo	INTERGENIC
SBS	Chr5	17452334	A-T	Homo	INTERGENIC
SBS	Chr5	20154823	G-T	Homo	UTR_3_PRIME
SBS	Chr5	24238333	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	5636092	C-A	Homo	INTERGENIC
SBS	Chr6	21343278	G-A	Homo	INTERGENIC
SBS	Chr7	3238060	G-A	Hetero	INTERGENIC
SBS	Chr7	17804611	G-A	Hetero	INTERGENIC
SBS	Chr7	23083659	G-A	Hetero	INTERGENIC
SBS	Chr8	4461865	T-C	Hetero	INTERGENIC
SBS	Chr8	10736023	C-T	Hetero	INTRON
SBS	Chr9	7261613	C-T	Hetero	INTERGENIC
SBS	Chr9	7776310	T-C	Hetero	INTERGENIC
SBS	Chr9	9692588	A-C	Hetero	INTRON
SBS	Chr10	1132086	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g008600
SBS	Chr11	11904679	T-C	Hetero	INTRON
SBS	Chr11	15130231	G-C	Hetero	INTERGENIC
SBS	Chr11	24885116	T-C	Hetero	INTERGENIC
SBS	Chr11	28749247	T-A	Hetero	INTERGENIC
SBS	Chr12	1730613	G-A	Hetero	UTR_5_PRIME
SBS	Chr12	15478353	G-A	Hetero	INTERGENIC
SBS	Chr12	18614100	A-G	Hetero	INTRON
SBS	Chr12	23353889	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	25444338	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1377298	1377307	9
Deletion	Chr4	1472749	1472750	1
Deletion	Chr4	1503085	1503086	1
Deletion	Chr4	3408042	3408055	13
Deletion	Chr6	9107852	9107857	5
Deletion	Chr6	11532610	11532614	4
Deletion	Chr11	12113139	12113145	6
Deletion	Chr1	13428091	13428099	8
Deletion	Chr9	13510891	13510909	18
Deletion	Chr6	13703154	13703157	3
Deletion	Chr5	14155546	14155547	1
Deletion	Chr11	17620587	17620591	4
Deletion	Chr7	17746219	17746220	1
Deletion	Chr4	17779915	17779916	1
Deletion	Chr4	20799620	20799623	3
Deletion	Chr8	22898431	22898438	7
Deletion	Chr5	25148846	25148851	5
Deletion	Chr3	37057072	37057073	1	OsKitaake03g414100
Deletion	Chr3	37177053	37177067	14
Deletion	Chr1	38422816	38422823	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	29427492	29525010	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes