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Mutant Information

Mutant Name	FN-203 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-203 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22267240 C-A Hetero INTERGENIC
SBS Chr1 38799837 T-A Hetero INTRON
SBS Chr1 43236661 G-A Hetero INTERGENIC
SBS Chr2 16013778 A-G Homo INTRON
SBS Chr4 34266810 A-G Hetero INTERGENIC
SBS Chr4 36560716 T-A Hetero INTERGENIC
SBS Chr5 6849696 T-A Homo INTERGENIC
SBS Chr5 10396464 G-A Hetero INTERGENIC
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 22334460 G-T Homo INTRON
SBS Chr7 7238262 T-G Hetero INTERGENIC
SBS Chr7 8207408 G-A Hetero INTERGENIC
SBS Chr7 12265930 G-A Homo INTERGENIC
SBS Chr7 13408991 C-T Hetero INTRON
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr8 13810677 A-G Hetero INTERGENIC
SBS Chr8 19221593 T-A Hetero INTERGENIC
SBS Chr9 286883 C-T Hetero INTERGENIC
SBS Chr9 3598936 C-T Hetero INTERGENIC
SBS Chr9 12119246 T-C Hetero INTERGENIC
SBS Chr9 12215819 C-A Hetero INTERGENIC
SBS Chr9 19850327 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 1081769 G-A Hetero INTERGENIC
SBS Chr12 13149376 G-T Hetero INTERGENIC
SBS Chr12 19444080 G-A Homo INTERGENIC
SBS Chr12 19444081 G-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 5197295 5197297 2
Deletion Chr7 10515001 10605000 89999 2
Deletion Chr5 12424107 12424108 1
Deletion Chr5 15149474 15149476 2
Deletion Chr11 15776031 15776032 1
Deletion Chr7 16381069 16381159 90
Deletion Chr12 18357941 18358109 168
Deletion Chr5 18845730 18845735 5
Deletion Chr3 18994740 18994742 2
Deletion Chr12 19443648 19443652 4
Deletion Chr10 19476001 19514000 37999 3
Deletion Chr12 19491482 19491483 1
Deletion Chr1 33528975 33528976 1
Deletion Chr1 42062363 42062364 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 6974686 6974691 4
Insertion Chr8 27703245 27703248 2
Insertion Chr9 22636753 22636758 4
Insertion Chr1 39814436 39814438 1
Insertion Chr3 9084393 9084398 4
Insertion Chr10 21368120 21368123 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2479806 2486713
Inversion Chr1 2479832 2486784
Inversion Chr7 10473204 10519505

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 12575719 Chr1 38684603 OsKitaake03g169800
Translocation Chr3 12591903 Chr1 38684600
Translocation Chr10 19477127 Chr7 10232562 OsKitaake10g142900
Translocation Chr10 19479510 Chr7 11016761

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22267240	C-A	Hetero	INTERGENIC
SBS	Chr1	38799837	T-A	Hetero	INTRON
SBS	Chr1	43236661	G-A	Hetero	INTERGENIC
SBS	Chr2	16013778	A-G	Homo	INTRON
SBS	Chr4	34266810	A-G	Hetero	INTERGENIC
SBS	Chr4	36560716	T-A	Hetero	INTERGENIC
SBS	Chr5	6849696	T-A	Homo	INTERGENIC
SBS	Chr5	10396464	G-A	Hetero	INTERGENIC
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	22334460	G-T	Homo	INTRON
SBS	Chr7	7238262	T-G	Hetero	INTERGENIC
SBS	Chr7	8207408	G-A	Hetero	INTERGENIC
SBS	Chr7	12265930	G-A	Homo	INTERGENIC
SBS	Chr7	13408991	C-T	Hetero	INTRON
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr8	13810677	A-G	Hetero	INTERGENIC
SBS	Chr8	19221593	T-A	Hetero	INTERGENIC
SBS	Chr9	286883	C-T	Hetero	INTERGENIC
SBS	Chr9	3598936	C-T	Hetero	INTERGENIC
SBS	Chr9	12119246	T-C	Hetero	INTERGENIC
SBS	Chr9	12215819	C-A	Hetero	INTERGENIC
SBS	Chr9	19850327	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	1081769	G-A	Hetero	INTERGENIC
SBS	Chr12	13149376	G-T	Hetero	INTERGENIC
SBS	Chr12	19444080	G-A	Homo	INTERGENIC
SBS	Chr12	19444081	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	5197295	5197297	2
Deletion	Chr7	10515001	10605000	89999	2
Deletion	Chr5	12424107	12424108	1
Deletion	Chr5	15149474	15149476	2
Deletion	Chr11	15776031	15776032	1
Deletion	Chr7	16381069	16381159	90
Deletion	Chr12	18357941	18358109	168
Deletion	Chr5	18845730	18845735	5
Deletion	Chr3	18994740	18994742	2
Deletion	Chr12	19443648	19443652	4
Deletion	Chr10	19476001	19514000	37999	3
Deletion	Chr12	19491482	19491483	1
Deletion	Chr1	33528975	33528976	1
Deletion	Chr1	42062363	42062364	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2479806	2486713
Inversion	Chr1	2479832	2486784
Inversion	Chr7	10473204	10519505

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes