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Mutant Information

Mutant Name	FN-204 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-204 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14574473 A-C Homo INTRON
SBS Chr2 3606066 A-G Hetero INTERGENIC
SBS Chr2 13993106 C-G Hetero INTERGENIC
SBS Chr3 5197390 G-A Homo INTERGENIC
SBS Chr3 19225004 C-G Homo INTERGENIC
SBS Chr3 35234364 C-G Homo INTERGENIC
SBS Chr5 767849 A-G Homo INTERGENIC
SBS Chr5 5392711 T-C Homo INTERGENIC
SBS Chr5 15050617 G-A Hetero INTERGENIC
SBS Chr6 10521560 G-A Hetero INTERGENIC
SBS Chr6 21809601 T-A Hetero INTERGENIC
SBS Chr6 26383902 A-G Hetero INTRON
SBS Chr7 2449133 T-G Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 26647151 G-C Hetero INTERGENIC
SBS Chr10 11980129 C-G Hetero INTERGENIC
SBS Chr10 20062137 T-A Homo INTERGENIC
SBS Chr11 12275032 T-G Homo INTRON
SBS Chr12 43171 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1356917 1356919 2
Deletion Chr10 2225051 2225053 2
Deletion Chr7 3908381 3908382 1
Deletion Chr8 9983359 9983363 4
Deletion Chr12 15184513 15184516 3
Deletion Chr4 15273001 15361000 87999 8
Deletion Chr4 15461001 15499000 37999
Deletion Chr11 17513001 17598000 84999 9
Deletion Chr4 17722892 17722893 1
Deletion Chr3 19185001 19209000 23999
Deletion Chr4 33470635 33470640 5
Deletion Chr1 34967443 34967447 4

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9765307 9765311 3
Insertion Chr6 6326754 6326757 2
Insertion Chr5 12532511 12532513 1
Insertion Chr5 30012537 30012539 1
Insertion Chr6 15924 15927 2
Insertion Chr7 11995366 11995368 1
Insertion Chr8 21770418 21770421 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 17424160 18017479
Inversion Chr9 17424176 18017480

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7053541 Chr6 19288313 OsKitaake06g174000
Translocation Chr9 7053542 Chr6 19290510 OsKitaake06g174000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14574473	A-C	Homo	INTRON
SBS	Chr2	3606066	A-G	Hetero	INTERGENIC
SBS	Chr2	13993106	C-G	Hetero	INTERGENIC
SBS	Chr3	5197390	G-A	Homo	INTERGENIC
SBS	Chr3	19225004	C-G	Homo	INTERGENIC
SBS	Chr3	35234364	C-G	Homo	INTERGENIC
SBS	Chr5	767849	A-G	Homo	INTERGENIC
SBS	Chr5	5392711	T-C	Homo	INTERGENIC
SBS	Chr5	15050617	G-A	Hetero	INTERGENIC
SBS	Chr6	10521560	G-A	Hetero	INTERGENIC
SBS	Chr6	21809601	T-A	Hetero	INTERGENIC
SBS	Chr6	26383902	A-G	Hetero	INTRON
SBS	Chr7	2449133	T-G	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	26647151	G-C	Hetero	INTERGENIC
SBS	Chr10	11980129	C-G	Hetero	INTERGENIC
SBS	Chr10	20062137	T-A	Homo	INTERGENIC
SBS	Chr11	12275032	T-G	Homo	INTRON
SBS	Chr12	43171	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1356917	1356919	2
Deletion	Chr10	2225051	2225053	2
Deletion	Chr7	3908381	3908382	1
Deletion	Chr8	9983359	9983363	4
Deletion	Chr12	15184513	15184516	3
Deletion	Chr4	15273001	15361000	87999	8
Deletion	Chr4	15461001	15499000	37999
Deletion	Chr11	17513001	17598000	84999	9
Deletion	Chr4	17722892	17722893	1
Deletion	Chr3	19185001	19209000	23999
Deletion	Chr4	33470635	33470640	5
Deletion	Chr1	34967443	34967447	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17424160	18017479
Inversion	Chr9	17424176	18017480

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes