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Mutant Information

Mutant Name	FN-206 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-206 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3869937 C-A Hetero INTRON
SBS Chr1 6300340 T-G Homo INTERGENIC
SBS Chr1 6419549 G-A Homo INTERGENIC
SBS Chr1 8919823 A-T Homo INTERGENIC
SBS Chr1 37262036 G-A Hetero INTERGENIC
SBS Chr2 20828322 A-T Homo INTERGENIC
SBS Chr2 29995996 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g304500
SBS Chr3 943732 C-T Hetero INTERGENIC
SBS Chr3 2452179 T-G Hetero INTERGENIC
SBS Chr3 15138517 G-A Homo INTERGENIC
SBS Chr3 15138518 C-A Homo INTERGENIC
SBS Chr3 22597534 G-T Hetero INTERGENIC
SBS Chr3 27750623 G-C Hetero UTR_3_PRIME
SBS Chr3 31974067 T-C Hetero INTRON
SBS Chr4 4500982 T-C Hetero INTERGENIC
SBS Chr4 12584130 G-A Homo INTERGENIC
SBS Chr4 12584131 C-A Homo INTERGENIC
SBS Chr4 12584133 T-A Homo INTERGENIC
SBS Chr4 29802795 G-A Hetero INTERGENIC
SBS Chr4 30702914 G-T Hetero INTERGENIC
SBS Chr5 7354374 T-C Hetero INTERGENIC
SBS Chr5 28380068 G-A Hetero UTR_3_PRIME
SBS Chr6 23493115 G-A Hetero INTRON
SBS Chr7 5346004 G-A Hetero UTR_5_PRIME
SBS Chr7 6716337 G-T Hetero INTERGENIC
SBS Chr7 24108358 C-T Homo INTRON
SBS Chr7 24128929 A-T Homo INTERGENIC
SBS Chr8 15170403 G-A Hetero INTERGENIC
SBS Chr8 29298618 C-T Hetero INTERGENIC
SBS Chr9 1294629 C-T Homo INTERGENIC
SBS Chr9 7515035 A-G Hetero INTERGENIC
SBS Chr9 9133962 C-T Homo INTERGENIC
SBS Chr9 11079360 G-A Homo INTRON
SBS Chr10 20070175 C-T Hetero INTERGENIC
SBS Chr11 3908123 G-C Hetero INTERGENIC
SBS Chr11 6612564 A-T Hetero INTERGENIC
SBS Chr11 6612565 C-T Hetero INTERGENIC
SBS Chr12 8902572 A-T Hetero INTERGENIC
SBS Chr12 19871812 G-A Hetero INTERGENIC
SBS Chr12 23851750 C-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 847042 847049 7
Deletion Chr3 6261277 6261282 5
Deletion Chr10 12080001 12157000 76999 7
Deletion Chr1 12520019 12520020 1
Deletion Chr2 13706128 13706129 1
Deletion Chr11 14734001 14865000 130999 6
Deletion Chr3 15021034 15021035 1
Deletion Chr10 16013001 16484000 470999 55
Deletion Chr10 16492001 16509000 16999 2
Deletion Chr10 16580001 16627000 46999 10
Deletion Chr4 19254881 19254886 5
Deletion Chr12 21921920 21921930 10
Deletion Chr4 25468108 25468109 1
Deletion Chr2 26606136 26606138 2
Deletion Chr11 29508849 29508850 1
Deletion Chr3 33307502 33307504 2 OsKitaake03g355650
Deletion Chr1 38550601 38550602 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21854266 21854269 2
Insertion Chr3 25354000 25354003 2
Insertion Chr5 176980 176984 3
Insertion Chr11 25129211 25129213 1
Insertion Chr1 9267184 9267186 1
Insertion Chr1 43966419 43966424 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5179991 6029981 OsKitaake03g086400
Inversion Chr3 6029982 6443857 2
Inversion Chr10 16015062 16580898
Inversion Chr10 16509315 16625394 OsKitaake10g113600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3869937	C-A	Hetero	INTRON
SBS	Chr1	6300340	T-G	Homo	INTERGENIC
SBS	Chr1	6419549	G-A	Homo	INTERGENIC
SBS	Chr1	8919823	A-T	Homo	INTERGENIC
SBS	Chr1	37262036	G-A	Hetero	INTERGENIC
SBS	Chr2	20828322	A-T	Homo	INTERGENIC
SBS	Chr2	29995996	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g304500
SBS	Chr3	943732	C-T	Hetero	INTERGENIC
SBS	Chr3	2452179	T-G	Hetero	INTERGENIC
SBS	Chr3	15138517	G-A	Homo	INTERGENIC
SBS	Chr3	15138518	C-A	Homo	INTERGENIC
SBS	Chr3	22597534	G-T	Hetero	INTERGENIC
SBS	Chr3	27750623	G-C	Hetero	UTR_3_PRIME
SBS	Chr3	31974067	T-C	Hetero	INTRON
SBS	Chr4	4500982	T-C	Hetero	INTERGENIC
SBS	Chr4	12584130	G-A	Homo	INTERGENIC
SBS	Chr4	12584131	C-A	Homo	INTERGENIC
SBS	Chr4	12584133	T-A	Homo	INTERGENIC
SBS	Chr4	29802795	G-A	Hetero	INTERGENIC
SBS	Chr4	30702914	G-T	Hetero	INTERGENIC
SBS	Chr5	7354374	T-C	Hetero	INTERGENIC
SBS	Chr5	28380068	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	23493115	G-A	Hetero	INTRON
SBS	Chr7	5346004	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	6716337	G-T	Hetero	INTERGENIC
SBS	Chr7	24108358	C-T	Homo	INTRON
SBS	Chr7	24128929	A-T	Homo	INTERGENIC
SBS	Chr8	15170403	G-A	Hetero	INTERGENIC
SBS	Chr8	29298618	C-T	Hetero	INTERGENIC
SBS	Chr9	1294629	C-T	Homo	INTERGENIC
SBS	Chr9	7515035	A-G	Hetero	INTERGENIC
SBS	Chr9	9133962	C-T	Homo	INTERGENIC
SBS	Chr9	11079360	G-A	Homo	INTRON
SBS	Chr10	20070175	C-T	Hetero	INTERGENIC
SBS	Chr11	3908123	G-C	Hetero	INTERGENIC
SBS	Chr11	6612564	A-T	Hetero	INTERGENIC
SBS	Chr11	6612565	C-T	Hetero	INTERGENIC
SBS	Chr12	8902572	A-T	Hetero	INTERGENIC
SBS	Chr12	19871812	G-A	Hetero	INTERGENIC
SBS	Chr12	23851750	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	847042	847049	7
Deletion	Chr3	6261277	6261282	5
Deletion	Chr10	12080001	12157000	76999	7
Deletion	Chr1	12520019	12520020	1
Deletion	Chr2	13706128	13706129	1
Deletion	Chr11	14734001	14865000	130999	6
Deletion	Chr3	15021034	15021035	1
Deletion	Chr10	16013001	16484000	470999	55
Deletion	Chr10	16492001	16509000	16999	2
Deletion	Chr10	16580001	16627000	46999	10
Deletion	Chr4	19254881	19254886	5
Deletion	Chr12	21921920	21921930	10
Deletion	Chr4	25468108	25468109	1
Deletion	Chr2	26606136	26606138	2
Deletion	Chr11	29508849	29508850	1
Deletion	Chr3	33307502	33307504	2	OsKitaake03g355650
Deletion	Chr1	38550601	38550602	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5179991	6029981	OsKitaake03g086400
Inversion	Chr3	6029982	6443857	2
Inversion	Chr10	16015062	16580898
Inversion	Chr10	16509315	16625394	OsKitaake10g113600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes